Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00028 ATGGCACGTTTAGCTCCTAAAACAAGGGTTCTCAGAGACGGGCAGTGGCAAGAGCAAGATGCAGCAATTTTAGTACCTGGGGATATAATTAGCATAAAATTGGGAGATATAGTTCCAGCTGATGCTCGCTTGCTAGAAGGGGATCCTCTAAAAATTGATCAGTCAGCCCTTACTGGAGAATCTCTACCTGTCACGAAAAGAACTGGTGACGAGGTCTTTTCAGGTTCAACATGTAAACATGGAGAGATTGAGGCTGTAGTGATAGCAACAGGAGTTCACTCCTTTTTTGGAAAGGCAGCATACCTGGTTGATAGTACCGAAGTTGTTGGACATTTTCAGAAGGTCCTTACCTCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGATAATTTTTGAAATAATTATAATGTTCCCAGTGGAGCATCGATCATACAGGGATGGAATCAACAATCTTCTTGTTCTCCTAATTGGAGGAATACCCATCGCTATGCCAACAGTCTTATCTGTAACACTTGCAATTGGCTCTCACCGTCTTTCTCAGCAGGGAGCCATAACTAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTGCTCTGCAGTGACAAAACTGGAACTCTTACACTGAATCGCCTGACTGTTGATAAAAACCTTATTGAGGTTTTTAATAGAAATATGGACAAAGATACGGTTGTTCTACTAGCAGCCAGAGCAGCTAGGCTGGAAAACCAGGATGCCATTGATACTGCCGTAGTTAATATGCTAGCTGATCCAATGGAGGCACGTGCAAACATCACTGAAGTTCATTTTCTACCATTCAATCCAGTAGATAAACGTACAGCTATAACGTATATTGATTCTGATGGCAATTTTTATAGGGCCACTAAAGGAGCTCCTGAACAGATTCTAGATTTGTGTCAAGAGAGAGATCAAATTGCCAGAAAAGTGCACGATATAATAGACAAATTTGCTGAAAGGGGATTGCGATCTCTTGCAGTTGCTTATCAGGAAGTTCCTGAAAAATCCAAGGATAGCCCTGGAGGTCCTTGGAATTTTTGTGGCTTGTTGCCTTTGTTTGATCCACCAAGACATGATAGTGCGGAAACCATCCGAAGAGCACTTAACCTTGGAGTCTGTGTAAAGATGATTACAGGTGATCAATTAGCCATTGCAAAGGAGACAGGCCGAAGACTTGGCATGGGAACAAACATGTACCCTTCTTCTTCTTTGTTAGGGCATGAAAAAGAAGAGCATGAAGCTCTCCCTGTAGATGAGCTCGTTGAAATGGCAGATGGATTTGCTGGTGTTTATCCTGAACACAAGTATGAAATAGTGAAAATTTTACAAGAAAAGAAACATGTTGTTGGGATGACCGGGGATGGAGTAAATGATGCCCCAGCATTGAAGAAAGCAGATATCGGAATAGCTGTGTCAGACGCTACAGATGCTGCAAGAAGTGCTGCTGATTTGGTCTTAACCGAACCTGGGTTAAGTGTCATTGTTAGTGCTGTGTTAACAAGCAGAGCTATATTCCAAAGAATGAAAAATTATACAATATATGCTGTCTCCATCACCATAAGGATAGTGGTTGGTTTTACTCTCCTGGCATTAATTTGGGAGTATGATTTTCCACCCTTCATGGTCTTGATCATTGCAATACTAAATGATGGTAGTACTTCTGATCATTTCTTCACCCCAGTACTGGACATGAATTATAAAACTTCCACTTTCCTTTTCTTCCGTATCTACTTAGTCAAGCAATAG 1773 0.4129 MARLAPKTRVLRDGQWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAYLVDSTEVVGHFQKVLTSIGNFCICSIAIGIIFEIIIMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDKNLIEVFNRNMDKDTVVLLAARAARLENQDAIDTAVVNMLADPMEARANITEVHFLPFNPVDKRTAITYIDSDGNFYRATKGAPEQILDLCQERDQIARKVHDIIDKFAERGLRSLAVAYQEVPEKSKDSPGGPWNFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGHEKEEHEALPVDELVEMADGFAGVYPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARSAADLVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVVGFTLLALIWEYDFPPFMVLIIAILNDGSTSDHFFTPVLDMNYKTSTFLFFRIYLVKQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00028 590 FunFam Plasma membrane ATPase 6 90 - -
Vian4g00028 590 NCBIfam HAD-IC family P-type ATPase 436 542 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00028 590 NCBIfam HAD-IC family P-type ATPase 5 224 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00028 590 FunFam Plasma membrane ATPase 355 509 - -
Vian4g00028 590 NCBIfam plasma-membrane proton-efflux P-type ATPase 2 561 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian4g00028 590 Gene3D - 1 104 - -
Vian4g00028 590 SFLD p-type atpase 185 513 IPR044492 -
Vian4g00028 590 Gene3D - 215 362 IPR023299 GO:0000166
Vian4g00028 590 PRINTS P-type cation-transporting ATPase superfamily signature 53 67 - -
Vian4g00028 590 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Vian4g00028 590 PRINTS P-type cation-transporting ATPase superfamily signature 484 496 - -
Vian4g00028 590 PRINTS P-type cation-transporting ATPase superfamily signature 357 368 - -
Vian4g00028 590 PRINTS P-type cation-transporting ATPase superfamily signature 379 389 - -
Vian4g00028 590 PRINTS P-type cation-transporting ATPase superfamily signature 461 480 - -
Vian4g00028 590 Gene3D - 170 518 IPR023214 -
Vian4g00028 590 Pfam haloacid dehalogenase-like hydrolase 199 475 - -
Vian4g00028 590 Pfam E1-E2 ATPase 4 182 - -
Vian4g00028 590 FunFam Plasma membrane ATPase 215 362 - -
Vian4g00028 590 SUPERFAMILY HAD-like 199 508 IPR036412 -
Vian4g00028 590 ProSitePatterns E1-E2 ATPases phosphorylation site. 205 211 IPR018303 -
Vian4g00028 590 SFLD C1.7: P-type atpase like 185 513 - -
Vian4g00028 590 SUPERFAMILY Calcium ATPase, transmembrane domain M 103 560 IPR023298 -
Vian4g00028 590 SUPERFAMILY Calcium ATPase, transduction domain A 6 102 IPR008250 -
Vian4g00028 590 PRINTS H+-transporting ATPase (proton pump) signature 433 449 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00028 590 PRINTS H+-transporting ATPase (proton pump) signature 492 517 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00028 590 PRINTS H+-transporting ATPase (proton pump) signature 319 337 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00028 590 PRINTS H+-transporting ATPase (proton pump) signature 461 477 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g00028 590 PANTHER CALCIUM-TRANSPORTING ATPASE 1 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00028 Vian-Chr4 298803 303871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00028 7 561 Primary Pumps ATPases AT1G17260 86.667 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00028 K01535 - gmx:100795836 1029.24