Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00027 ATGGTGGAGTTTAGAAGGTTGTTACTGTTGCTGTGTATCACTTCCTGCATTCTTTGTTGGATGCCCAATGGTGCTACTTCTGCTACAGATCCAAATGATGCTGATCTATTCAGTGGCTCACATCACATCAGTTCTATTACCGTGATTGTTAGTGTTTTAGACAGTTTGTTGGTTTTCTCTACGAAGTACCGCTTGCGTTGCATGCCTATGGTCTCTTTGCCGACACTCTCGGTCTTTCCTCTTTCACCCGCTTACGTTGACTTCTTATCATCAACATCTCGTGCTCAGTTTGATGTACAAGTAAATCATCTGTGCGTTATAGTTCGCAATCAAATAAAGCTAAAAATTCTCAAAGCCCTCTATGCTGCAGCTGCCCTTCTGGACTTCGGAACCATCCTCTATAGTAGCACTCAGCAATCCCTTGTCCCATCTGCCATATTTCAAATATGGGATTTGAGCCAGCATTGCTTTTGTGACCCTTCAGAATATCTAGAAAGTTTGCTTGATGAACATCTGATGATTTTGAATCTCATTTGCATCCCTAAATATGGCCTTGTATGGGTGCATTATGATCCTTCAAATAACTGGGTTTTGTACTGGCCCGATGATATAATTTTGAAAGGTTTTTCTTCAGCTACTGCTGTGAGACTTTTATTTCAAAATTTGAACTCACCATCCCAACTTGGTTGGCCTGTTAATGGCGATGATCCATGTGGGCAACCTTGGAAAGGAATTTCTTGCTCAGGCAACCGTGTTACAGAGATTAAGTTATCTAATCTTGGACTGACTGGGTCGTTACCTTATGGATTAGAAAGCTTGACATCTTTGAGCACCCTAGACATGAGTGGCAACAGTCTTGGCGGCAGCATACCATACCAGCTCCCTCCATATGTGCAGCGATTAAATCTTGCTTATAATAACATCACAGGGACTGTTCCTTACTCTATTTCAAACTTGAACGCTCTTACAGACCTGAATCTTGGTCACAATCAGCTCCAGCAAGGACTGGCTGTTAACTTTCTTAATCTTTCTACCCTCTCTACATTGAATCTGCAAAACAATCAGTTTACGGGCACTATTGATGTCCTTGCTAATCTTCCTCTGGATAATCTGAATGTGGAGAACAATAATTTTACTGGATGGATACCCGAACAGTTGAAGGATATAAACCTACAGAGCGGTGGTAATGGATGGAGCTCCGGACCTGCACCCCCACCTCCTCCTGGTACACCTCCCGTACCTAAAAGGAACAAACACCACCAGTCTGGAGGGGGAAGCCCCACCACCCCAGATGTCGGTGACAGCAGCAGCAGCTCAGTTGACACGGGCAAAAAGTCCGGTATAGGAGGTGGCGCCATTGCTGGAATTGTAGTCTCTGTCATAGTTGTTGGGGTAATAGTAGCGTTCTTTCTGGTGAAGAGAAAATCCAAGAAGACATCTTCAGATTTAGAAAAGCTGGACGATCAATCCTTTGCTCCACTTCCCTCAAATGGAGTGCATGAAGAGAAGTCAGAGCAAACATCCTCTGTTTCAGACATGAAGACCTTTGATACTTCTGCCTCAATAAATCTTAAACCCCCACCTATTGATCGACATAAATCATTTGATGATGAAGAGTTCTCCAAGAAGCCCACAATTGTGAAGAAGACTGTAACAGCTCCTGCAAATGTGAAATCATATTCTATTGCTGACCTGCAGATTGCTACTGGTAGCTTCAGTGTGGATCATCTTGTTGGCGAGGGGTCTTTTGGGCGTGTGTACCGTGCTCAATTTGATGATGGAGAGGTTCTTGCAGTGAAGAAGATAGATTCATCTGTCCTTTCCAATGATTTGTCAGATGATTTTATAGAAATAATTTCAAACATCTCCAGTTTGCATCATCCAAATGTGACAGAGCTTGTAGACGAATATAGTAAACCACTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGTACTGCACGTGCTTTAGAGTACCTACATGAAGTTAGTTCGCCATCAGTTGTTCATAAGAATATTAAATCAGCCAACATATTACTTGATACAGAGCTTAATCCTCATCTTTCAGATAGTGGATTGGCTAGCTATATTCCAAACGCAGACCAGATATTGAGTCATAATGTTGGTTCTGGATATGATGCACCTGAAGTTGCGTTGTCTGGTCAGTATACTCTGCAAAGTGATGTCTACAGCTTTGGGGTTGTCATGTTGGAACTTCTCAGCGGACGGATGCCATTTGATAGCTCAAGGCCAAGATCAGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGGTAAAATGGTTGATCCTACATTGAAGGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCTGATGTTATTGCCCTTTGCGTGCAGCCGGAGCCTGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTGCGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTAGCAGTAGTGATCATGGAGGATCCCAACGAGGAAGTGATGAGGCAGCTCTACGGGAGATCTAA 2553 0.4336 MVEFRRLLLLLCITSCILCWMPNGATSATDPNDADLFSGSHHISSITVIVSVLDSLLVFSTKYRLRCMPMVSLPTLSVFPLSPAYVDFLSSTSRAQFDVQVNHLCVIVRNQIKLKILKALYAAAALLDFGTILYSSTQQSLVPSAIFQIWDLSQHCFCDPSEYLESLLDEHLMILNLICIPKYGLVWVHYDPSNNWVLYWPDDIILKGFSSATAVRLLFQNLNSPSQLGWPVNGDDPCGQPWKGISCSGNRVTEIKLSNLGLTGSLPYGLESLTSLSTLDMSGNSLGGSIPYQLPPYVQRLNLAYNNITGTVPYSISNLNALTDLNLGHNQLQQGLAVNFLNLSTLSTLNLQNNQFTGTIDVLANLPLDNLNVENNNFTGWIPEQLKDINLQSGGNGWSSGPAPPPPPGTPPVPKRNKHHQSGGGSPTTPDVGDSSSSSVDTGKKSGIGGGAIAGIVVSVIVVGVIVAFFLVKRKSKKTSSDLEKLDDQSFAPLPSNGVHEEKSEQTSSVSDMKTFDTSASINLKPPPIDRHKSFDDEEFSKKPTIVKKTVTAPANVKSYSIADLQIATGSFSVDHLVGEGSFGRVYRAQFDDGEVLAVKKIDSSVLSNDLSDDFIEIISNISSLHHPNVTELVDEYSKPLIWNSRVKIALGTARALEYLHEVSSPSVVHKNIKSANILLDTELNPHLSDSGLASYIPNADQILSHNVGSGYDAPEVALSGQYTLQSDVYSFGVVMLELLSGRMPFDSSRPRSEQSLVRWATPQLHDIDALGKMVDPTLKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFSSSDHGGSQRGSDEAALREI 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00027 850 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 536 637 - -
Vian4g00027 850 MobiDBLite consensus disorder prediction 400 414 - -
Vian4g00027 850 MobiDBLite consensus disorder prediction 481 513 - -
Vian4g00027 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 210 820 IPR046959 -
Vian4g00027 850 Gene3D Ribonuclease Inhibitor 211 400 IPR032675 -
Vian4g00027 850 ProSiteProfiles Leucine-rich repeat profile. 345 367 IPR001611 GO:0005515
Vian4g00027 850 ProSitePatterns Protein kinases ATP-binding region signature. 578 601 IPR017441 GO:0005524
Vian4g00027 850 ProSiteProfiles Protein kinase domain profile. 572 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00027 850 SUPERFAMILY L domain-like 214 392 - -
Vian4g00027 850 Gene3D Transferase(Phosphotransferase) domain 1 631 838 - -
Vian4g00027 850 Gene3D Transferase(Phosphotransferase) domain 1 556 630 - -
Vian4g00027 850 Pfam Protein kinase domain 648 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g00027 850 SUPERFAMILY Protein kinase-like (PK-like) 554 816 IPR011009 -
Vian4g00027 850 MobiDBLite consensus disorder prediction 392 443 - -
Vian4g00027 850 MobiDBLite consensus disorder prediction 421 443 - -
Vian4g00027 850 MobiDBLite consensus disorder prediction 828 850 - -
Vian4g00027 850 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 622 830 - -
Vian4g00027 850 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 209 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00027 Vian-Chr4 285324 292457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00027 210 829 Strubbelig Receptor Gene Family AT3G14350 62.577 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vian4g00027 Pkinase 7.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00027 - - gmx:100807707 1021.15