Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00024 ATGAGTGAGCAAACTGACACTCTGGGTGAATCCCCAGCCGTTGCGTTAATCGGAAAGATAATGATAATCGTTATAATAATCTTCTTCTTCCTTGTTGTAATTGCTCTCGGCTTTCATCTCTTCACAAGAAACTTCTGGTGGCGCGAGCCTGCTCCCCAATCACGGCGCCGCCGCCGGTTTGTGTTTTCCTCCGGTCAAGAGGGTGGTCTTCGTAGGGGACTGGATCCCTCCGTTCTGAACTCCATACCCGTGTTGGTATTCCAAGCCCATGACTTAAAGGAGGGTTTGGAATGTGCGGTTTGCCTCTCGGAGGTGGTGGAAGGAGAAAAGGCCAGGCTTTTGCCTAAGTGCAATCATGGATTTCACGTTGATTGTATTGACATGTGGTTCCAATCCCATTCTACCTGCCCTCTTTGCAGGAACTCTGTTGCTGTACAATCCGATGAAAATAACAGTGCACAGAACTCAGAATCAGAGTCTCCGACTTTTCCCACTAACGTCTTGGTTTGGGGGGATCACAACCAAATAACTTCAACTGGTGGTGGTTCTTTGGAGGAAGGTGCTTCTCAGCCACCTTGCCCCTCCTCATCCTCTTCCGCTGCTACTTGCAATGATGATGATAGTAACAACAGTAATAGACATCGCGGAACCTTGGTTATTGACATACCAAGTGATATCACTTCGACTTCTTTGTCGCCTTCTGCAAGCAGGTTTGCTGAAGATGACTTGAAATCGCCAATGACGGGAAGACTGAGATCATTGAAGAGGCTTTTGAGCAGAGACAGAAAAAATCCTTGGAGTCCTACTTCTCTAGATGTAGAACAAGCAGCTAATTCAGGGGGAGGGACACAGCTGAGTTAG 861 0.4762 MSEQTDTLGESPAVALIGKIMIIVIIIFFFLVVIALGFHLFTRNFWWREPAPQSRRRRRFVFSSGQEGGLRRGLDPSVLNSIPVLVFQAHDLKEGLECAVCLSEVVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNSVAVQSDENNSAQNSESESPTFPTNVLVWGDHNQITSTGGGSLEEGASQPPCPSSSSSAATCNDDDSNNSNRHRGTLVIDIPSDITSTSLSPSASRFAEDDLKSPMTGRLRSLKRLLSRDRKNPWSPTSLDVEQAANSGGGTQLS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00024 286 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Vian4g00024 286 MobiDBLite consensus disorder prediction 263 286 - -
Vian4g00024 286 MobiDBLite consensus disorder prediction 174 236 - -
Vian4g00024 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 145 IPR013083 -
Vian4g00024 286 MobiDBLite consensus disorder prediction 174 286 - -
Vian4g00024 286 SUPERFAMILY RING/U-box 78 146 - -
Vian4g00024 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 187 - -
Vian4g00024 286 SMART ring_2 98 139 IPR001841 -
Vian4g00024 286 CDD RING-H2_EL5-like 97 140 - -
Vian4g00024 286 FunFam RING-H2 finger protein ATL3 66 145 - -
Vian4g00024 286 MobiDBLite consensus disorder prediction 243 262 - -
Vian4g00024 286 Pfam Ring finger domain 97 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00024 Vian-Chr4 273109 273969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00024 17 264 C3H Transcription Factor Family AT1G53820 42.761 4.36e-63 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00024 - - ccaj:109796557 293.508