Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00022 ATGACCAACCGAATAAAAACAGCTCTTCCCGCTATTTCGGATGCCCTCACCAAGACCAAGACCAAAATCTTGTTGGCTCTCGCTGCCACTCTTCTTGTCGCCCTCGCCGTCGTCGCCGGAGTCAGCTCTCGCAAGAACTCCGGCGACAATGCCTCCTTCTCCAGTTCGTCGCACGCCATCATCAAAAGCGCATGCAGCAGCACCTTGTACCCGGAGTTGTGCTTCTCAAGCATAGCCTCTGAACCCGGCTTGGCCGACAAAGTTTCCAGCCACAAGAACGTGATAGAGCAGTCGCTGAACATAACCGCTGGAATCGTTGAGCGGAATTACTTTACCGTGAAGAAGCTCTTGAACGTAAAGAGCCTGACCAAGAGGCAGAAAACGGCCCTCCACGATTGCTTGGAAACCATTGACGAGACCTTGGACGAGCTCCACAAGGCCATAGATGAATTCAAAGACTACCCCTCCAAGAAGCCTCTCTCGCACCACGCCGAGGATCTCAAAACTCTCATCAGTTCGGCCATAACCAACCATGAGACTTGCCTCGACGGGTTCTCTCACGACCAGGCCGATAAAAGACTGAGGAAGCATTTCCAGGCAGGCCAGGTGCACGCCGAGCACTTGTGCAGCAACGCATTGGCCATGACAAAGAACCTCACTGACACCGACATGGCCATGGCCATGCACAACGACGACAAAAACGAGCACAGGAAAACCATGGAGGACCCCCATGAAATCGTGTGGCCCCACTGGATTTCCGCCGCCGACCGCCGCCTTCTGCAGTCGGGTACGGTCAGTCCTAACGTGGTAGTGGCCGCGGACGGCAGCGGGAACTTCAGGACGGTGTCGGCAGCGGTGGCTGCGGCTCCTGAGAGTGGTAGCAAGAGATACGTGATCAGGATCAAAGCAGGTGTGTACAGAGAGAACGTGGATGTGCCGAAGAAGAAGACTAACATAATGTTCCTTGGGGATGGCAGGACCAACACCATCATCACAGCTAGTAGAAACGTGGTAGACGGCAGCACCACCTTCAATTCTGCCACAGTTGCCGTGGTGGGTGAAAGATTCTTGGCAAGAGACATCACCTTTCAAAACACAGCTGGTCCCTCAAAGCACCAAGCGGTTGCCCTCAGAGTTGGTGCTGACCTCTCAGCATTCTACAGGTGCGACTTTCTTGCATACCAAGACACCCTTTACGTCCACAGCAACCGCCAATTCTTTATCAGTTGCTACGTAGCAGGCACAGTCGACTTCATCTTCGGTAACTCTGCGGCTGTCATCCAGAACTCCGACATCCACGCTAGGCGTCCTAATCGTGGGCAGAAGAACATGGTCACCGCTCAGGGCCGCGTTGACCCCAACCAAAACACCGGCATTGTCATTCAGAAAAGCAGGATTGGTGCAACCAAAGACTTGGAATCTGTCAAGAGCAGCTTCCCCACGTTTCTCGGGAGGCCATGGAAGGAGTACTCTCGTACTGTCATCATGCAGTCAACCATAAGTGACGTCATTGACCCTGCTGGGTGGCACGAGTGGACTGGGAACTTTGCTTTGAACACGTTGTTCTACGGGGAGTATCAGAACACTGGGCCTGGTGCTGCAACCTCAAAGAGGGTCACTTGGAAAGGGTTTAAGGTCATCACCAGTGCTGCTGAGGCTCAGCGCTTCACTCCTGCCAATTTCATTGCAGGTTCAAGCTGGTTGCCCTCTACTGGCTTCCCATTCTCTCTTGGCCTCTAG 1740 0.5379 MTNRIKTALPAISDALTKTKTKILLALAATLLVALAVVAGVSSRKNSGDNASFSSSSHAIIKSACSSTLYPELCFSSIASEPGLADKVSSHKNVIEQSLNITAGIVERNYFTVKKLLNVKSLTKRQKTALHDCLETIDETLDELHKAIDEFKDYPSKKPLSHHAEDLKTLISSAITNHETCLDGFSHDQADKRLRKHFQAGQVHAEHLCSNALAMTKNLTDTDMAMAMHNDDKNEHRKTMEDPHEIVWPHWISAADRRLLQSGTVSPNVVVAADGSGNFRTVSAAVAAAPESGSKRYVIRIKAGVYRENVDVPKKKTNIMFLGDGRTNTIITASRNVVDGSTTFNSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYRCDFLAYQDTLYVHSNRQFFISCYVAGTVDFIFGNSAAVIQNSDIHARRPNRGQKNMVTAQGRVDPNQNTGIVIQKSRIGATKDLESVKSSFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWHEWTGNFALNTLFYGEYQNTGPGAATSKRVTWKGFKVITSAAEAQRFTPANFIAGSSWLPSTGFPFSLGL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00022 579 Pfam Plant invertase/pectin methylesterase inhibitor 60 215 IPR006501 GO:0004857
Vian4g00022 579 CDD PMEI-like_3 63 220 - -
Vian4g00022 579 SMART PMEI_2 56 215 IPR006501 GO:0004857
Vian4g00022 579 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Vian4g00022 579 PANTHER PECTINESTERASE 32 569 - -
Vian4g00022 579 FunFam Pectinesterase 262 579 - -
Vian4g00022 579 FunFam Pectinesterase 57 220 - -
Vian4g00022 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 221 IPR035513 -
Vian4g00022 579 Gene3D - 262 579 IPR012334 -
Vian4g00022 579 NCBIfam pectinesterase inhibitor domain 31 220 IPR006501 GO:0004857
Vian4g00022 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 220 IPR035513 -
Vian4g00022 579 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Vian4g00022 579 Pfam Pectinesterase 268 564 IPR000070 GO:0030599|GO:0042545
Vian4g00022 579 SUPERFAMILY Pectin lyase-like 264 578 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00022 Vian-Chr4 257596 260177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00022 14 579 Carbohydrate Esterase AT3G14310 66.209 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00022 K01051 - jre:109013060 823.157