Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00017 ATGTGTGGAGGAGCTATTATCTCTGACTTCATTCCGGCGGCAGTCACTGCCAGGTCTCGCCGGATCACCGCCGGTCATCTGTGGTCGGATTTGAAGAAACGGACATCTGAGGTCATCCACTCGGACGATGACTTCGAGGCTGATTTTAGGGATTTCAAGGACGATTCCGACATCGAAACCGACGTCGACGCCGACCACCAAGTCAAACCCTTTGCTTTCTCCGCCTCTTCTCAGCGGGCAGTGAAATCTGTGGCATTCAATGGTGGAGCTGAAAAGTCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGATCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAACGTTCTAAATTAAATCCACTGGGAAATCGGAAGATTGTTCAGCCCAATGTTCACAAGTTCAATGCTGGGAACAATCAGAACGACCTTCGTTGGCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTTTGCTGACATGGGTTCCTTCCCCGGCAGTGGAAATGGGCTCAGATCTCTGCCTTCGACTGATAATGTGACCCTTTACTTCAGTTCAGATCAGGGGAGTAACTCATTTGATTGTGCAGATCTTGGGTGGAGTGAAAAGGCTCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGCGATTCTCATTTTGCAAAGGATGCCACCCATCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTCTTCCAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAATTGAAGTTTTTTCAGATGCCTTATCTTGAAGGGAGCTGGGACGATACTTCATTGGAATCCTTGCTATCTTGTGATACAACCCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTGCTTCCATGGCTGGCGGAGTTTTCTGA 1080 0.4769 MCGGAIISDFIPAAVTARSRRITAGHLWSDLKKRTSEVIHSDDDFEADFRDFKDDSDIETDVDADHQVKPFAFSASSQRAVKSVAFNGGAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEEASVKRSKLNPLGNRKIVQPNVHKFNAGNNQNDLRWPMDLVEQKPLVNQFADMGSFPGSGNGLRSLPSTDNVTLYFSSDQGSNSFDCADLGWSEKAPKTPEISSMLSAPLDCDSHFAKDATHQTNSQDVVSMQDDSSKTLSEELVDIESELKFFQMPYLEGSWDDTSLESLLSCDTTQDGGNLMNLWSFDDIASMAGGVF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00017 359 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vian4g00017 359 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Vian4g00017 359 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Vian4g00017 359 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Vian4g00017 359 PANTHER DNA-BINDING DOMAIN 77 298 IPR044808 GO:0003700|GO:0009873
Vian4g00017 359 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vian4g00017 359 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Vian4g00017 359 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vian4g00017 359 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vian4g00017 359 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00017 Vian-Chr4 235953 237740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00017 1 359 AP2-EREBP Transcription Factor Family AT1G53910 45.431 5.51e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian4g00017 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00017 K09286 - gmx:100170723 509.605