Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00016 ATGGCGAAGGGAGGAGAGAAATGCAGTGAGGAGTTGTATGAGGTTCTGGGCATAGAGAAGGAGTGTAGCCCATCTGAGCTCAAGAAAGCCTATAAGAAACTTGCACTGAGATGGCACCCAGATCGTTGTTCAGGGAGCCGCGAGGAAGAAGGGAAGAAGAAGTTCCAGGCAATCCAGCACGCCTATTCTGTCTTATCTGACGCCAACACAAGGTTACTGTACGACGTAGGTGTCTATGACAGCGATGACGACCAAACCGGCATGGGTGATTTCTTGAATGAAATGGCCACAATGATGACTCAATCAAAACCCAGTGAGAATGGGGAGGAGAGTTTTGAGGAGTTCCAACAGCTCTTGGAAGAAATGTTTCAAGCCACTGCACCTGTTTCACCTACGTACAGCATGACTAATGGTGAAGGTTCTAGATCAAATAAACGTAATTCCACTGAAATTAATTTTGGAAAGACAGACAATACATCTGAACTCAATTCCAGCTACCAGAACTTCTGTTTAGGGGGAGGTGGATCAGCTCCAAGATATGGAGAAGGGAATTCCATGAAGAGGAGGTAG 570 0.4614 MAKGGEKCSEELYEVLGIEKECSPSELKKAYKKLALRWHPDRCSGSREEEGKKKFQAIQHAYSVLSDANTRLLYDVGVYDSDDDQTGMGDFLNEMATMMTQSKPSENGEESFEEFQQLLEEMFQATAPVSPTYSMTNGEGSRSNKRNSTEINFGKTDNTSELNSSYQNFCLGGGGSAPRYGEGNSMKRR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00016 189 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Vian4g00016 189 MobiDBLite consensus disorder prediction 130 171 - -
Vian4g00016 189 SUPERFAMILY Chaperone J-domain 11 90 IPR036869 -
Vian4g00016 189 ProSiteProfiles dnaJ domain profile. 11 78 IPR001623 -
Vian4g00016 189 MobiDBLite consensus disorder prediction 130 189 - -
Vian4g00016 189 SMART dnaj_3 10 70 IPR001623 -
Vian4g00016 189 PANTHER PUTATIVE, EXPRESSED-RELATED 4 157 - -
Vian4g00016 189 Gene3D DnaJ domain 8 132 IPR036869 -
Vian4g00016 189 CDD DnaJ 11 67 IPR001623 -
Vian4g00016 189 PRINTS DnaJ domain signature 50 70 IPR001623 -
Vian4g00016 189 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vian4g00016 189 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vian4g00016 189 Pfam DnaJ domain 12 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00016 Vian-Chr4 220254 222602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00016 13 75 C2H2 Transcription Factor Family AT1G74250 50.000 1.62e-14 69.3