Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02749 ATGGAAAGCAGAGTGGTATTTGAGAGTGATCTGAACCTCAAGGCAACAGAACTTAGATTAGGGTTGCCAGGGACAGAGGAAAAGGAAGACAAGAACCTGCGTACACATGCTGTTCTTAGAAACAACAAAAGACAAGTGCGTGAAACTTCTCAAGACTCCATTTCCATTTCCAATGCTTCACATCACCAACAACACGTAGAGACTGTTTCAGCTCCTCCACTCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGTGTGCAGGAGGGCGAGGGGGATGGGATCTTTGTGAAAGTGAGCTTGGATGGAGCACCTTACCTCAGAAAAATTGACTTGAAAGTCTACAGGGGTTATCCAGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGGCCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCTCCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGCTCGGAAGCAAGTGGGCTGGGTTGTGTTGTATGA 591 0.4535 MESRVVFESDLNLKATELRLGLPGTEEKEDKNLRTHAVLRNNKRQVRETSQDSISISNASHHQQHVETVSAPPLKAKIVGWPPIRSYRKNSVQEGEGDGIFVKVSLDGAPYLRKIDLKVYRGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEASGLGCVV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02749 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 191 IPR003311 GO:0005634|GO:0006355
Vian3g02749 196 ProSiteProfiles PB1 domain profile. 99 186 IPR000270 GO:0005515
Vian3g02749 196 FunFam Auxin-responsive protein 94 196 - -
Vian3g02749 196 MobiDBLite consensus disorder prediction 47 67 - -
Vian3g02749 196 Gene3D - 94 196 - -
Vian3g02749 196 SUPERFAMILY CAD & PB1 domains 89 185 - -
Vian3g02749 196 MobiDBLite consensus disorder prediction 48 67 - -
Vian3g02749 196 Pfam AUX/IAA family 16 193 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02749 Vian-Chr3 42398575 42399784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02749 102 189 B3 DNA Binding Superfamily AT2G46530 38.636 7.45e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian3g02749 AUX_IAA 8e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02749 K14484 - gmx:100800212 319.701