Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02747 ATGACACCCCTCAAACTGCATCACTTCCTCCTTCTCATGTTCATCTTCTTCTTCTTCTTGCTCCCTTCTTCCCACGCCCAAACGCTACGTCAGGCGAACAACACGGGCTTCACGTGCACGGGCACCCGCACCTGCGCCGCCTACGCCTTCTACCGTGCCTCCGCCCCCAACTTCCTGGACCTGGCCGCCGTGGGCGACCTCTTCGAGGTGAGCCGCCTAATGATAGCCACGCCGAGCAACATCTCCTCCGTGTCCTCTGCCCTGGTCGAAGACCAGCCCCTCTTCGTCCCTCTGACCTGCTCCTGCAACCCCGTGAATGCCACCTTCGGGTCCCTCTCCTACGCCAACATCTCCTACGCCATCCAACCCAACGACACCTTCTTCGTCGTCTCCACCTACAAGTTCAACAACCTCACCACCTACCCTTCCGTCGAAACCGTCAACCCCACCTTGGTCGCCACCAACCTCTCCATCGGCCAGGTCACCATCTTTCCTGTCTTCTGCAAATGCCCCGAAACCAACAACACTAACTATATGATCTCCTACGTTGTGCAACCCGAGGACAACATCTCCTCCATTGCCTCAGCTTTTGGGGTTCAGGAACAGGCTATAATTGACGTCAACAACGACACACTCCATGATTACGACACCATTTTCATCCCTGTGGAGCAGCTTCCGTCTCTGTCGCAGCCTGCGGTGGCTCCGGCTGCGCCCCCTGGTGGGAATGGGAGTGACACTGGGAGTGGGAGTGGCAATGATAGAACTGGAACTGTTAGAGGGTTGGGGATTGGGTTGGGGGTGGTGGGGATGTTATTGGTGTTGGTAAGTGGGTTGTGGTTGTGGAGAGAGTTTGTGATGAAGAAAAGGTTGGGATATGAGGATGAGGAGGAGGAGGGAGGGAGGAAGAAGGTGTATTCGGGAGGCAAAGAGGGACAGAAAGGTGATTTGGATGTGAAACTGATGGCGAATGTGTCGGATTGTTTGGACAAGTATAGGGTTTTTGATGTTGAGGAACTGGTGGAGGCCACGAATGGGTTTGATGGAAGGTCCTTGATTGAGGGATCCGTTTACAAAGGGGAGATTGATGGGGAGCTCTTTGCCATCAAGAAGATGAAATGGAATGCCTATGAGGAACTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTGGTGAAGTTGGAGGGATTCTGCATAGACCCAGAAGAAGCAAACTGCTATCTAGTCTATGAATATGTGGAGAATGGATCTCTATACTCGTGGTTGCATGAGGAGAGAAAGGAAAAGTTGAACTGGAAAACAAGGCTAAGAATAGCCGTCGACATTGCCAACGGCCTCCAATACATCCACGAGCACACAAGGCCACGAGTTGTGCACAAAGACATCAAGAGCAGCAACATTCTGTTGGACTACAACAAGAGAGCCAAAATTGCAAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATCACCATGCACATTGTGGGAACACAGGGCTACATTGCCCCTGAATATCTGGCTGATGGTGTGGTCTCCACAAAGATGGATGTGTTCTCTTTTGGGGTTGTGTTACTTGAACTAATTTCTGGGAAGGAAGCCATTGATAAGGAGGGAAATCTGTTGTGGGAAAGTGCCATCAGAACCTTTGAAGTGGACAGTGAGCAAGAGAAGGCTAGGAGACTGAGGGAATGGATGGATAAGGACATTTTAAGGGAGACATGTTCAATGGAAAGTTTGATGGGTGTTCTCACTGTTGCAATTGCTTGCTTGCAGAAAGACCAGTCAAAGAGGCCAAGCATAATGGACATTGTCTATGCACTGTGTAAAAGTGAAGATTTGGGCTTTGACATCTCAGATGATGGGTTTGGCTCACCACGGGTGGTGGCTAGGTAG 1890 0.5079 MTPLKLHHFLLLMFIFFFFLLPSSHAQTLRQANNTGFTCTGTRTCAAYAFYRASAPNFLDLAAVGDLFEVSRLMIATPSNISSVSSALVEDQPLFVPLTCSCNPVNATFGSLSYANISYAIQPNDTFFVVSTYKFNNLTTYPSVETVNPTLVATNLSIGQVTIFPVFCKCPETNNTNYMISYVVQPEDNISSIASAFGVQEQAIIDVNNDTLHDYDTIFIPVEQLPSLSQPAVAPAAPPGGNGSDTGSGSGNDRTGTVRGLGIGLGVVGMLLVLVSGLWLWREFVMKKRLGYEDEEEEGGRKKVYSGGKEGQKGDLDVKLMANVSDCLDKYRVFDVEELVEATNGFDGRSLIEGSVYKGEIDGELFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEERKEKLNWKTRLRIAVDIANGLQYIHEHTRPRVVHKDIKSSNILLDYNKRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDKEGNLLWESAIRTFEVDSEQEKARRLREWMDKDILRETCSMESLMGVLTVAIACLQKDQSKRPSIMDIVYALCKSEDLGFDISDDGFGSPRVVAR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02747 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vian3g02747 629 SMART LysM_2 181 221 IPR018392 -
Vian3g02747 629 Gene3D Transferase(Phosphotransferase) domain 1 412 615 - -
Vian3g02747 629 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 13 608 - -
Vian3g02747 629 Pfam LysM domain 182 220 IPR018392 -
Vian3g02747 629 FunFam PTI1-like tyrosine-protein kinase 3 412 611 - -
Vian3g02747 629 SUPERFAMILY Protein kinase-like (PK-like) 332 606 IPR011009 -
Vian3g02747 629 CDD LysM 180 220 IPR018392 -
Vian3g02747 629 Pfam Protein kinase domain 363 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02747 629 Gene3D LysM domain 179 221 IPR036779 -
Vian3g02747 629 ProSiteProfiles Protein kinase domain profile. 336 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02747 629 SMART serkin_6 346 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02747 629 Gene3D Phosphorylase Kinase; domain 1 315 411 - -
Vian3g02747 629 ProSiteProfiles LysM domain profile. 180 226 IPR018392 -
Vian3g02747 629 MobiDBLite consensus disorder prediction 230 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02747 Vian-Chr3 42366479 42369702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02747 36 608 Receptor kinase-like Gene Family AT2G23770 33.956 1.48e-85 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vian3g02747 Pkinase 9.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02747 - - gmx:100802872 898.656