Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02731 ATGCCAGTGAGACAGATGAGGGAGAGCTCAGAGCAACATCTTGTTATCAAGCCCCATTTGCAGAACCCCATGAATGGAGCTAAGAAGGTTCCTAGAGCTGTTCAAAATGGCAAAGGTCCACCACCACCACTGCCACAAGAACCCCACAACCAAACTTCATCTCATGCTAGGAACAAGGGGAGAAGAAGGGGCAGGGGTGGCAGAAAATGTGACCAAGGGGATGTTTTGATGAGACCTATTGTGACAACTGGTGTTGAAAATGGAAGCACCATGTGTGGTGAAATAGAGATGGGATACCCTACATCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGCTTTGGACAAGTTGGAACAAAGTGCATTGTGAAGGGTAACCATTTCTTTGCAGAGTTACCAGACAAGGACTTAAACCAGTATGATGTCAGTATCACCCCTGAAGTCTCTTCCAAAGCTGTGAACAGGTCCATAATAGCAGAACTCGTGAGGCTGTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGCCACTTCCCTTTTCCTGGAGAGAGTTTAAGATAAAGGTTGTGGATGATGAGGATGGAGTTAATGGCCCCAAAAGGGAAAGAGAATATAGAGTGGTGATCAAGTTTGTTGCTAGGGCGAATTTGCATCACTTGGGCCAGTTTCTGGCTGGTAAACGTGCTGATGCTCCACAAGAGGCACTCCAAATTCTTGACATTGTATTAAGAGAGCTATCATCTAAGAGGTTCTGTCCAATTGGGAGATCATTCTTTTCACCGGATATTAGAACACCCCAACGGCTTGGGGAAGGTTTGGAGTCTTGGTGTGGATTTTACCAAAGCATAAGGCCCACTCAGATGGGTCTTTCCCTCAATATTGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATCCTGTCAAGGCAATTGTCTGACGCTGATCGCATCAAAATTAAGAAAGCTCTTAGAGGAGTTAAAGTTGAAGTAACCCACAGAGGGAGTGTTAGAAGAAAGTACCGAGTTTCTGGTTTGACTTCTCAACCGACCAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTAGTTGAATATTTTCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAAGCAAATTATTTGCCAATGGAGGCCTGCAAAATTGTTGAGGGACAACGCTACACGAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCCCGTGATCGTGAAAATGACATTTTGCGGACCATTCAGCACAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATAAGTGAGAAGCTAGCTTCGGTAGAAGCGAGAATTCTTCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTGCCCCAAGTTGGTCAATGGAATATGATGAACAAGAAAATGATAAATGGGATGACTGTCAGCCGGTGGGCATGCATAAATTTTTCACGAAGTGTACAAGACACTGTTGCTCTCTCTTTTTGTGCCGAACTAGCTCAAATGTGCCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCATGTGGAGAAAGCTTTAAAGCATGTTTATCATGTGTCATCAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTATTAGCAATATTACCTGACAACAACGGTTCTCTCTACGGTGATCTAAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACGAAGCATGTCTTCAAGATCACTAAGCAGTACCTGGCTAATGTGTCTTTGAAAATCAATGTCAAGATGGGAGGTAGAAACACTGTTTTGGTTGATGCTGTAAGTTGTAGAATACCATTGGTTAGTGACATACCGACTATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGGGAAGACTCCAGCCCTTCAATTGCAGCTGTAGTAGCATCTCAAGACTGGCCTGAAGTGACAAAATATGCCGGTTTAGTGTGTGCTCAGGCTCATAGGCAGGAACTTATACAAGACTTGTACAAAATGTGGCATGACCCTGTTCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGATTTCCTTTAGAAAGGCAACAGGACAAAAGCCTCTAAGGATTATATTTTATAGGGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTCTACGAGTTGGATGCAATTCGAAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAACAACCACAGGGACAGAAACAGTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTGGATTCTAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCCGGTATCCAGGGTACAAGTCGTCCTGCTCATTATCATGTTCTTTGGGACGAAAACAACTTTACAGCAGATGGAATCCAATCTTTGACAAACAATCTATGTTATACATATGCAAGGTGTACACGCTCAGTGTCTGTTGTTCCTCCTGCATATTACGCACACTTAGCTGCATTTCGAGCACGGTTCTACATGGAACCAGACATGCAAGAAAATGGCTCCTCAGGAGGTGGTGGTGGTGGTGGTTCGAAGGCTACAAGAGGTGGTGGAGAGTGCGGCGTGGTGAAGCCGTTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2916 0.4283 MPVRQMRESSEQHLVIKPHLQNPMNGAKKVPRAVQNGKGPPPPLPQEPHNQTSSHARNKGRRRGRGGRKCDQGDVLMRPIVTTGVENGSTMCGEIEMGYPTSSKSLSFAPRPGFGQVGTKCIVKGNHFFAELPDKDLNQYDVSITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGPLPFSWREFKIKVVDDEDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVGQLLGKDILSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDTVALSFCAELAQMCQVSGMEFNPEPVIPIYNAKPEHVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKMWHDPVRGLVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSSGGGGGGGSKATRGGGECGVVKPLPALKENVKRVMFYC 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02731 971 CDD Piwi_ago-like 474 924 IPR045246 -
Vian3g02731 971 Gene3D - 494 667 - -
Vian3g02731 971 FunFam protein argonaute 10-like 673 971 - -
Vian3g02731 971 Pfam Piwi domain 605 924 IPR003165 GO:0003676
Vian3g02731 971 ProSiteProfiles PAZ domain profile. 316 430 IPR003100 GO:0005515
Vian3g02731 971 Pfam Argonaute linker 1 domain 264 313 IPR014811 -
Vian3g02731 971 Gene3D - 673 971 IPR036397 GO:0003676
Vian3g02731 971 ProSiteProfiles Piwi domain profile. 604 925 IPR003165 GO:0003676
Vian3g02731 971 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 101 925 - -
Vian3g02731 971 CDD PAZ_argonaute_like 315 429 - -
Vian3g02731 971 FunFam Protein argonaute-2 309 435 - -
Vian3g02731 971 Pfam Mid domain of argonaute 513 590 IPR032473 -
Vian3g02731 971 SUPERFAMILY Ribonuclease H-like 596 926 IPR012337 -
Vian3g02731 971 SUPERFAMILY PAZ domain 310 470 IPR036085 GO:0005515
Vian3g02731 971 Pfam Argonaute linker 2 domain 456 502 IPR032472 -
Vian3g02731 971 Pfam PAZ domain 342 446 IPR003100 GO:0005515
Vian3g02731 971 Pfam N-terminal domain of argonaute 120 254 IPR032474 -
Vian3g02731 971 FunFam Argonaute 10 494 667 - -
Vian3g02731 971 SMART DUF1785_2 263 315 IPR014811 -
Vian3g02731 971 SMART PAZ_2_a_3 320 452 IPR003100 GO:0005515
Vian3g02731 971 SMART Piwi_a_2 604 925 IPR003165 GO:0003676
Vian3g02731 971 Gene3D paz domain 309 434 - -
Vian3g02731 971 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02731 Vian-Chr3 42213388 42219433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02731 1 971 Eukaryotic Initiation Factors Gene Family AT5G43810 81.419 0.0 1648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02731 K11593 - gmx:100819073 1862.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02731 3 42213388 42219433 Vian3g02731 3 42213388 42219433 ECH