Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02727 ATGAATCGTATCGATGATGGTCCTGTGATTGTGAAGGAGGAGTTTCCTGGTGAAGGGTTGGTTGCTCCACAGCCGCTTGAGGGGCTTCATGAAAGTGGTCCTCCACCATTCCTCACAAAGACTTATGACATAGTTGATGATGTTTCCACTGATGAGATAGTTTCATGGAGCAGAGCAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTTTCCATCTCTCTTCTCCCCAAATACTTCAAACACAACAACTTCTCCAGCTTTGTCAGACAGCTCAACACCTATGGGTTTAGAAAGGTGGATCCTGACAAATGGGAGTTTGCTAATGAAGGTTTCCTTAGAGGACAAAGGCATCTATTGAAGATCATAAGGAGGAGGAAGAGCAGTCAGCAACCTCAGGTACCACAACAATCTATGGACCATTGTGTTGAAGTGGGGAGGTTTGGATTAGATGGAGAAATCGATGGATTGAGACGTGACAAGCAGGTTCTGATGATGGAGCTGGTGAAACTTAGACAGCAACAGCAGAACACAAAAAACCACCTTCAATCAATGGAAAGTAGGCTCAAAAAGACTGAACAGAAACAGCAGCAGATGATGAAGTTCTTGGCAAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAAGAAAGGGAGTGGAGGAAGGAGCTGGAGGAAGCTATTTCCAACAAGAGAAGAAGGCCTATTTGTGATGCTGAAGAATGTTCAGTTTTGGTTAAACTTGAACAGGAGGAGTACAATGAGATTTCAGAGCTTGAGGTTTCTGACATAGAGCTTGCTATGGAAATGGAGGAACAAAGTGGAAGCCAAGAGAACATTTGTGGTGAAGAGGAGAAAGGAGGTGAAGATGAAAATAGAAATGAAGGCATTGAGGAAGTACTGTGGGAAGAACTTCTGAATGAGGGTGTTGAAGAAGATCTCCTAGCATTGGAAAATGATGATAATGAACATTTAACTTTGTTGTCTGAAGAACTTGGTTATTGA 1011 0.4313 MNRIDDGPVIVKEEFPGEGLVAPQPLEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRANNSFVVWDPQAFSISLLPKYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQRHLLKIIRRRKSSQQPQVPQQSMDHCVEVGRFGLDGEIDGLRRDKQVLMMELVKLRQQQQNTKNHLQSMESRLKKTEQKQQQMMKFLARAMQNPNFLQQLVQEREWRKELEEAISNKRRRPICDAEECSVLVKLEQEEYNEISELEVSDIELAMEMEEQSGSQENICGEEEKGGEDENRNEGIEEVLWEELLNEGVEEDLLALENDDNEHLTLLSEELGY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02727 336 Gene3D - 29 127 IPR036388 -
Vian3g02727 336 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02727 336 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02727 336 MobiDBLite consensus disorder prediction 272 297 - -
Vian3g02727 336 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02727 336 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02727 336 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02727 336 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02727 336 Coils Coil 154 195 - -
Vian3g02727 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 254 IPR027725 -
Vian3g02727 336 FunFam Heat shock transcription factor 1 30 127 - -
Vian3g02727 336 SUPERFAMILY "Winged helix" DNA-binding domain 32 126 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02727 Vian-Chr3 42169222 42170692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02727 20 336 HSF AT3G22830 55.028 2.63e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian3g02727 HSF_DNA-bind 2.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02727 K09419 - gmx:100806789 446.817