Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02724 ATGTCCTCGTCCTCACAAGAGCATAAAAGTAATGGTAATGAGGAAAACAATCTAAGGAAAGGGCAATGGACAGAAGAAGAAGATGCAATACTGGCAGCATATGTGAGAGAACATGGATCAGGAAATTGGAACACAGTGCAGCAAAACACTGGACTACTTCGTTGTGGGAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGATCTGAGGAGAGGTGCATTCAGCATAGAAGAACAAAACAAAGTCATTGGGTTACATGCGTTGATGGGAAATAAATGGGCCAAAATGGCACAGGAGTTGCCAGGACGAACAGACAATGAAATCAAGAACTTTTGGAATACTAGATTAAAGAAAAGGAAACGAGTTGGCTTAGAAGTCTACTCAGATGGCATAGAACCTGTGTTTGATGCTCACAACACAGAAACCAGTCTAGCTACCAACACTCATCGTGACTCAGAAGTAGTAGGTACATCATCTCAACATGCGATGCTCAATCATTCCGGTAACACTCAAAATCAACCACCCCGTGTACAACCAATTTCTATGGTTCGTGAAAACATGAATTTGTCTGTGAAACCTGAAGAAAACCAAATGCATGATGTCACTCAAGCATCTACATCATCTTGTGTACCACATGTGGTGTTCAACAATTCCAGTAACACTCAAAATCGACCACTCTATGCGCAACCAACTTCTATGGTACGTGGAAACATGAATTTACCTGTGAAACCTGAAGAAAAGCAAATGTATGATGTACCTCAAGCATCTACATCATCTTGTGTTCCACATGTGGTGTTCAACAATTCCAGTAACACTCAAAATCGACCACTGTATGCACAACCAACTTCTATGGTACGTGGAAACATGAATTTACCTGTGAAACCTGAAGAAAAGCAAATGTATGATGTACCTCAAGCATCTACATCATCTTGTGTTCCACATGTGGTGTTCAACAATTCCAGTAACACTCAAAATCGACCACTCTATGCACAACCAACTTCTATGGTACGTGGAAACATGAATTTACCTGTGAAACCTGAAGAAAAGCAAATGTATGATGTACCTCAAGCATCTACATCATCTTGTGTTCCACATGTGGTGTTCAACAATTTCAGTAACACTCAAAATCGACCACTCTATGCACAACCAACTTCTATGGTACGTGGAAACATGAATTTGCCTGTGAAACCTGAAGAAAAGCAAATGTATGATGTACCTCAAGCATCTACATCATCTTGTGTTCCACATGTGGTGTTCAACAATTTCAGTAACACTCAAAATCGACCACTCTATGCACAACCAACTTCTATGGTACGTGGAAACATGAATTTACCTGTGAAACCTGAAGAAAAGCAAATGTATGATGTACCTCAAGCATGCACATCATCCTGTGTTCCACATGTGGTGTTCAACAATTCCATTAACACTCAAAATCGACCACTCTATGCACAACCAACTTTTATGGTACGTGGAAACATGAATTTGCCTGTGAAACCTGAAGATAAGCAAATGTATGATGTACCTCAAGCATGTACATCATCTTGTGTTCCACATGTGGTGTTCAACAATTCTAATAACACTCAGAATCAACCACTCTATGCACAACCAATTTTTGAGGAACATCATGATTTTGATTGGTTACCGAGAGATTGGGCGTATGACGATTATGCAGAGCTGCCTCCATTCCCACCATCATGTGATGACAATGCAAAGCTGCCTCCATTGCCACTATCATGTGATGACTTACCATTTGCTGAGTCAATGAGCTTGAGAGAGAATTCTGAGGCTGAGACTAACCGGTATTATGAACCACGTTCTCCACGTAGCAATGGGTATTTGGAAACTATGTTTTATCCACCAAAGGTTTCGCAAGAACCAGATGATTTTCCCATGCAAGGGGAGTTGAATGTGGGAAATTCCGGAGAAATTTCCGACCAGAAAAAACCTGAAGATGAAGATGATTTGGGTGACTTGATTTGGATAGAGAATGAACATGGTCCTTATAAGGATTCTTCATGCGGCTATGTCCATCCTTTTTTGAAACCTTAA 2055 0.4049 MSSSSQEHKSNGNEENNLRKGQWTEEEDAILAAYVREHGSGNWNTVQQNTGLLRCGKSCRLRWTNHLRPDLRRGAFSIEEQNKVIGLHALMGNKWAKMAQELPGRTDNEIKNFWNTRLKKRKRVGLEVYSDGIEPVFDAHNTETSLATNTHRDSEVVGTSSQHAMLNHSGNTQNQPPRVQPISMVRENMNLSVKPEENQMHDVTQASTSSCVPHVVFNNSSNTQNRPLYAQPTSMVRGNMNLPVKPEEKQMYDVPQASTSSCVPHVVFNNSSNTQNRPLYAQPTSMVRGNMNLPVKPEEKQMYDVPQASTSSCVPHVVFNNSSNTQNRPLYAQPTSMVRGNMNLPVKPEEKQMYDVPQASTSSCVPHVVFNNFSNTQNRPLYAQPTSMVRGNMNLPVKPEEKQMYDVPQASTSSCVPHVVFNNFSNTQNRPLYAQPTSMVRGNMNLPVKPEEKQMYDVPQACTSSCVPHVVFNNSINTQNRPLYAQPTFMVRGNMNLPVKPEDKQMYDVPQACTSSCVPHVVFNNSNNTQNQPLYAQPIFEEHHDFDWLPRDWAYDDYAELPPFPPSCDDNAKLPPLPLSCDDLPFAESMSLRENSEAETNRYYEPRSPRSNGYLETMFYPPKVSQEPDDFPMQGELNVGNSGEISDQKKPEDEDDLGDLIWIENEHGPYKDSSCGYVHPFLKP 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02724 684 Gene3D - 20 72 - -
Vian3g02724 684 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vian3g02724 684 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vian3g02724 684 MobiDBLite consensus disorder prediction 1 22 - -
Vian3g02724 684 MobiDBLite consensus disorder prediction 626 656 - -
Vian3g02724 684 Gene3D - 75 121 - -
Vian3g02724 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vian3g02724 684 SMART sant 19 69 IPR001005 -
Vian3g02724 684 SMART sant 72 120 IPR001005 -
Vian3g02724 684 FunFam MYB-related transcription factor 19 72 - -
Vian3g02724 684 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Vian3g02724 684 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vian3g02724 684 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vian3g02724 684 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 3 322 - -
Vian3g02724 684 CDD SANT 23 67 IPR001005 -
Vian3g02724 684 CDD SANT 79 118 IPR001005 -
Vian3g02724 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02724 Vian-Chr3 42124333 42126621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02724 10 150 MYB Transcription Factor Family AT2G26960 60.000 2.11e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g02724 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02724 K09422 - vra:106763259 320.472