Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02723 ATGATTGCATCCAGTGGTGAAGTTCAAGCTGATCAGGAGTCTATTGAGTTGAGTAAGAAGAAGAATAAGAAGGAACAAAATCGACAACTCGAGCGGGACGCGATATTCAGAAAGCAACACAACATTCATGTCTCTGGTTATAATGTACCGTCACCTCTTCAAAGCTTTGGCGAATTGAAATCAAGGAAAACCCTTGCATTTGTATGTCCAATGCTTATGAAGCTTAAGGACCCAGAAAATGGTGGCATTCGAGTTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAACTTGCCAAAGGAAAAAAATTTGGTATTAAGTTAATGACTAAAAATCTCTTAAGAAATGTTGATTTTTCAAAGTTTTCATGTGATATACTAATATCCACACCACTCCGATTACGATTCTCTATCAAGAAGAAGAAAATTGATCTCAGCAGAGTGGAGTTTCTTGTCCTGGATGAATCAGATAAGCTTTTTGAGCTCGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCCTTACTTGATTTTGTTGAAGTTCGAGCTCGATAA 588 0.3759 MIASSGEVQADQESIELSKKKNKKEQNRQLERDAIFRKQHNIHVSGYNVPSPLQSFGELKSRKTLAFVCPMLMKLKDPENGGIRVVILCHTRELSAQIFRECKKLAKGKKFGIKLMTKNLLRNVDFSKFSCDILISTPLRLRFSIKKKKIDLSRVEFLVLDESDKLFELELFKQIDSVLKACSNPLLDFVEVRAR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02723 195 Gene3D - 60 187 IPR027417 -
Vian3g02723 195 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 195 IPR014001 -
Vian3g02723 195 PANTHER RNA HELICASE 61 182 - -
Vian3g02723 195 SMART ultradead3 46 193 IPR014001 -
Vian3g02723 195 MobiDBLite consensus disorder prediction 13 28 - -
Vian3g02723 195 MobiDBLite consensus disorder prediction 1 28 - -
Vian3g02723 195 Pfam DEAD/DEAH box helicase 63 182 IPR011545 GO:0003676|GO:0005524
Vian3g02723 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 183 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02723 Vian-Chr3 42118956 42123924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02723 63 180 Eukaryotic Initiation Factors Gene Family AT5G11200 30.081 7.68e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02723 K14779 - vum:124830243 315.464