Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02720 ATGGGGAGGACAGGCAAATGGCTCAGGAACTTGTTGACAGGGAAGAGAGACAGAGAAAAAGAGAAGGAAAAATGTAGTACAAACTTGTGTCTGTTAAATGGAACAACAGAGAATCCAACAACTCCTGCTTCTTCAACAACAACAATAACAACAACAACCCCCAAGGAGAAAAGAAGGTGGAGTTTCAGGAGATCATCAGCTTCCAGGGAACTGAATCTTGCAGAATCTGGTGTCACTGCCTCAGTGACAGTGCAAACTACCACCACAGATGCTGAGAATGATCAAAGGAAACATGACACTGTGGTGGCTCTGGTGCCTGCTATCATCTGCTTGACTCCTGATTCCAATATATCGTCAACAAGTATTGAAGAGGCTGCAGCCATTAAAATTCAGTCAGTTTTTCGGTCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGACTGGTGAAGTTGCAGGCACTGGTGAGGGGTCACTTGGTGAGAAAACAGGCCAGGGAGACACTAAGATGCATGCAGGCTTTGGTCGTAGCACAAGCCAGGGCTCGTGCTCAGAGGGCAAGGATCGTGTCAGAAGGAAAGGTTGATCAAAATCTTTCACCCTACAGAATGTCCCCAGAGGACAACTTCTTCATGCACATGTATAATGAAATGGAAAGTGGTCTGGAATTGGAAGAGAATGCCAAGATTGTTGAGCTGGCTGTTTGCGAATCCAAAGCTAACTCCAGAGGCAGAAAAAGCTCTCCAAATCGAGAACTTTCTGATCACAGATTTTCTACATATTACTCATCAAATGGTTCATACTCAAAGGAGGAAAACTACAATGCATCACCTGCACCATCAACACTGACAGAATTGAGTCCGAGAGCATACAGTGGTCATTTTGAGGATTGTTCCTTCAGCACAGCACAAAGCAGTCCCTATTACAACAACACAAAGCTACCTTTTTCCTTCCCTAAACCAGCCTACACAGAAGCCATGTCCTATGACTACCCTTTATTTCCAAACTACATGGCCAACACAGAATCATCAAGGGCCAAAGCCAGATCACAGAGTGCACCAAAGGCAAGGCCAGATTCTGTTGAGAGGCAGCCAAGCAGAAGAAGGGCTTCAATGGAAGGGAGAAATGTCCCAAAGCCAGTCAGGATGCAGAGGTCATCTTCTCATGTTGGTGTCACTGCTCAAAACTACCAATATCCTTGGTCAATAAAGCTTGACAGGTCCATAGTCAGTGAGTGTGGCTCTACAAGCACAGTGCTCACAAACTCTAATTACTACTGCACATGA 1287 0.4538 MGRTGKWLRNLLTGKRDREKEKEKCSTNLCLLNGTTENPTTPASSTTTITTTTPKEKRRWSFRRSSASRELNLAESGVTASVTVQTTTTDAENDQRKHDTVVALVPAIICLTPDSNISSTSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQARETLRCMQALVVAQARARAQRARIVSEGKVDQNLSPYRMSPEDNFFMHMYNEMESGLELEENAKIVELAVCESKANSRGRKSSPNRELSDHRFSTYYSSNGSYSKEENYNASPAPSTLTELSPRAYSGHFEDCSFSTAQSSPYYNNTKLPFSFPKPAYTEAMSYDYPLFPNYMANTESSRAKARSQSAPKARPDSVERQPSRRRASMEGRNVPKPVRMQRSSSHVGVTAQNYQYPWSIKLDRSIVSECGSTSTVLTNSNYYCT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02720 428 Gene3D - 122 170 - -
Vian3g02720 428 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
Vian3g02720 428 Pfam IQ calmodulin-binding motif 150 166 IPR000048 GO:0005515
Vian3g02720 428 MobiDBLite consensus disorder prediction 35 56 - -
Vian3g02720 428 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Vian3g02720 428 SMART iq_5 145 166 IPR000048 GO:0005515
Vian3g02720 428 SMART iq_5 122 144 IPR000048 GO:0005515
Vian3g02720 428 Pfam Protein of unknown function (DUF4005) 306 376 IPR025064 -
Vian3g02720 428 PANTHER IQ-DOMAIN 5-RELATED 1 374 - -
Vian3g02720 428 MobiDBLite consensus disorder prediction 35 55 - -
Vian3g02720 428 ProSiteProfiles IQ motif profile. 147 174 IPR000048 GO:0005515
Vian3g02720 428 MobiDBLite consensus disorder prediction 342 389 - -
Vian3g02720 428 MobiDBLite consensus disorder prediction 360 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02720 Vian-Chr3 42093316 42095195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02720 1 425 IQD Protein Family AT4G14750 46.035 6.12e-97 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02720 - - pvu:PHAVU_007G277500g 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02720 3 42093316 42095195 Vian3g02720 3 42093316 42095195 ECH