Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02719 ATGGCAGAAACCAAAGAAGGTTCAGGTTCGGAGATGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAGCAAGACCCTTCTAACCCTACTCTCTATAGTAATCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAATAAAGCTCTAGATGATGCAGAGATAACAATCAAATTAAAACCCCAATGGGAGAAGGGATATTTCAGGAAGGGAAGCATATTGGAAGCCATGAAACGATACGACGATGCTTTAGCTGCCTTTCAGATAGCATTGCAGTATAACTCGCAAAGTCAAGAAGTATTAAGAAAGATAAAGAGGTTGAACCAACTGGTGAAAGATAGCAAGCGAGCCCAAGAAGTGGAGAATATGAGATCCAATGTTGACGTGGCCAAACATTTAGATACATTGAAATCTGAAATGGTTAGTATCCATTATGGATCGGAATACGGGAAAGATTTGTTCTCATTCCTTGTTGAGACTATAGAGACTGCTGTAAAATCATGGCATGAAACATCTTCAGTGGATGCTAGAGTTTACTTTCTTCTGGATAAGGAAAAGACACAGACCGATAAGTATGCCCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCACATACGCACAGCAACTGCTTTTCATTTCTTAGGCAGTACGCAGAGGAATCTTTCTCCAAAGCAGCCTGCTTGGTAACTCCCAAAAGCATTATTGCTTACCCACAGGTCTGGAAGGGCCAAGGATCAAGAAAGTGGAAACATGCACACAGTGACGGTTTCTTTGTGCAGTTTGAGTCACCCTCCCTGCGAAAGCTCTTTTTCATACCTAGTTCAAATGAAAAGGGACAGACATTGTGCAGGGATCCAGAGGTTTTGGACATTGGTGTTCATGAAGTTCTTCCCCGAATTATCAGAGATGCAAAAAACTTGGTATAA 975 0.4195 MAETKEGSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEITIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNSQSQEVLRKIKRLNQLVKDSKRAQEVENMRSNVDVAKHLDTLKSEMVSIHYGSEYGKDLFSFLVETIETAVKSWHETSSVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHSNCFSFLRQYAEESFSKAACLVTPKSIIAYPQVWKGQGSRKWKHAHSDGFFVQFESPSLRKLFFIPSSNEKGQTLCRDPEVLDIGVHEVLPRIIRDAKNLV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02719 324 PANTHER TPR REPEAT CONTAINING PROTEIN 8 320 - -
Vian3g02719 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Vian3g02719 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Vian3g02719 324 SMART tpr_5 79 112 IPR019734 GO:0005515
Vian3g02719 324 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Vian3g02719 324 Coils Coil 51 71 - -
Vian3g02719 324 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Vian3g02719 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vian3g02719 324 Pfam TPR repeat 18 58 - -
Vian3g02719 324 Gene3D Tetratricopeptide repeat domain 6 160 IPR011990 GO:0005515
Vian3g02719 324 FunFam serine/threonine-protein phosphatase 5 10 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02719 7 154 U-box Gene Family AT3G07370 25.000 3.74e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02719 - - gmx:100775252 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02719 3 42080691 42088591 Vian3g02719 3 42080691 42088591 ECH