Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02718 ATGACCAACTTTTACAATGGTGTGTTAAATCATGCACAATTATTTGAACTTCGTAACAATACAAGTTCAAAAGGATGCAAATTGTGCAATCAAGTTTTCATTAGCACACAAGCTCTCCTAGTTCATCTTGAGTCTCACATGGCACAAGAAGAAATAGCCATTAAAAGACTCCACTCATTACCTCAACATGTCAATTCTCAAAAGCAATTAGGTTTCCAATTGCCTATACAACCTATCATGGGTGGTGGTAGGGTTTTTCAAGCACAACCACAACCTATTATGGAGACAAATCACTCAATTAGAAGAAATCCAGTTTCTAATGCTAGCCAAATTGGTTCTTCCTCAGTACCAATTAGGAGAATGCAAGTTCCATCACAACTTTTTCCATATGGTGCAAATATCAATGATGATGGGTCCAAGGCATACATCTTGAAGTTGGAGAAACCCATCAAAAAGATTGATTTCATTGACTTGGTTAACACAGATGATGATAACAACTCAGAAGTGGAAGAGATAGATTTGAATTTAAAACTCTAG 537 0.3631 MTNFYNGVLNHAQLFELRNNTSSKGCKLCNQVFISTQALLVHLESHMAQEEIAIKRLHSLPQHVNSQKQLGFQLPIQPIMGGGRVFQAQPQPIMETNHSIRRNPVSNASQIGSSSVPIRRMQVPSQLFPYGANINDDGSKAYILKLEKPIKKIDFIDLVNTDDDNNSEVEEIDLNLKL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02718 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Vian3g02718 178 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02718 Vian-Chr3 42077441 42077977 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g02718 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02718 - K22870 pvu:PHAVU_007G277300g 217.624