Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02692 ATGGCAGATCTTTCTATCTTTGGAAGTTCTGAGCGTCTCGAGCAAGCGTTCATTACATTAAAAAAGGGCACGCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCGAAATTTTGTTCGTTCAGACTCTCATCGGATGAAACAAAGCTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTAAAATTAGCTGCTGTTTCACACATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTGATTTACAAGAAGGGGGAAAGATCACTTGATCTGATCTGCAAGGACCAAGCAGAGGTAGAGATATGGTTTTCATGTCTTAAAGCATTAATTTCCTCTGGAGAGCGTATTAAGCGTGGAATAAGTGATTTAAGCAATGATTGTGTTGACTTTGTTGCTGGAACACTAGAGTTCGCATCAAGCATTAGCCGTAGCAGGTTTTCTTTTGAATCGGCATCTCATGAATCTACATCGTCTTGGTCCAGGTCGGATACAAATATGGCACAGAGGACAAGTATCGGAGACGGTTCTCGTGTTAGTATATCAAGTATTAGCCACTCAAGTAGTGTAGGATCAGGGCTAGATGACATAGAATCTCTTGGTGATGTTTTCATATGGGGAGAGGTTTGGGGAGATGGCAATTCATCTGATGGATTGGGGAGCCAAGCTTCTGGTAAGATTGATGTGTTGACTCCTAAGGCATTAGAATCTGATGTTGTTCTTGATGTCAATCAGATTGGGCCCGGTGTACGTCACATTGCGTTAGTTACAAGGCAAGGTGAGCTTTTTACATGGGGAGAGGACTCTGGTGGAAGACTTGGCCATGGCTTTGAAAAAGATTTTGGCCGACCTCATCTTGTAGAGTCCCTAGCAATTACCAACATGTCTTCTGTTGCATGTGGTGAATATCATTCATGTGCCGTGTCTGTATCTGGTGACTTGTTCACCTGGGGTGATGCTACAAATAGTGCAGGACTTCTTGGTCATGGCAGTGATGTTAGCTACTGCATACCAAAGAGGGTGAGTGGCGCTTTAGAGGGACACCAGGTTGTATCCGTAGCATGCGGCGCATGGCATTCAGCATTAGCAACCACCCTTGGGAAATTGTTTACCTTTGGTGATGGAAGATTTGGTGTATTAGGCCATGGAGATAGAGAATGTGTATCATATCCAAAGCAGGTACAATTATTGAGTGGACAAAAGGCTATTAAAGTTGCATGTGGAATGTGGCATTCAGCTGCTATTATAGAGATTATGGATCCGTCTGGTTCAAACCCTTCATCCAAGAAGATCTTCACATGGGGTGATGGTGATCAGTATCGTTTGGGTCATGTTAACAAGGAAAATTACCTTCAACCAACTTGTGTAGCTGCCCTTGCTGATTATAGCTTTAACCAGATTGCATGTGGGTACACTATGACTGTTGCACTCACTGTATCTGGTCATGTTTTTACAATGGGAGGCACAGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTCCCAATTCTAGTCCGAGATAAGTTGGTAGGTGAGTTCGTGGAGGAAATAGCATGCGGAGCAAATCATGTCGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGTAGAGGTGCCAATGGAAGACTAGGACACGGAGACACAGATGACCAGAAAACTCCAACCTTGGTAGAAGCCTTGAAAGACAGGCATGTTAGGAATATCGCATGTGGCTCTACCTTTACATGTTGTATATGCTTACATAAATGGCTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCGTTTGGATTTACCCGAAAAAGGCATAATTGCTATAATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTCTAGAGCAGCATTGGCTCCGACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTGCTGATAGTGCTTCAAACTTAAATAAAGAAATTAGTCGTCCTTCCTCGTATGGAAGGGAAAAATTTGAGCGGGCAGAGGTGAAGTCTTCCAGAATTCTCTTGCCTCCCATCACAGAACCCATAAAATACCTTGAGATTAGGACTATTAAGCATGGAAATATAGATGAGACTTCTTCCATGGTCCGAGCAGCTCAAGTTCCTATATCTTTGCAATTGAAAGATGTCGCATTTCCAATTTCGCTGAGTTCTGCACAGAATTTTTTCAAGCCTCTTATTCAGTCAAGTCATACTCAGTCTCCACCTCCACCAATTAGACCTATGTCACCATATGCTAAAAGAAGACCACCAAGCCCACCTCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAAAAAGAAAAGTGATCATATGACTCAAGAAGTCTCAAAGTTGCAAAACAAAAATAAAAGTTTGAAGCAGAAGAGTGAAACACAAGAAATGAAGATTCAGGAGCTTCAGAAAGTTATTGAAGAGGAATCTTCTAAGTTTAGGGAAGCAAAGGATTTTATTAAGTCCATGACAGATAAGTTGAGGGAAGTGATTGAGACTTTGCAATCTGAGATTCCTGACAATGAGACTTTGAGAACCATGCATGCTCAAGCTGAAGAGTTTCTTAATGAAGAAAAACGTTTGGAACCTTCTTCCTCCCAACTGAGCCTCAACTCTAATCCACAAAGTGCACCTGATGTACCTGCCTCGGATAGTAACTCTCCAAAGGTTGTTCCATCCCCAGACGGAGAAAATACTTTTGAAGAAACCGGCAACTCATCTGCATCTAGTACAGCAGTGAGTACACCAAACTCAAGAAATATTTCAAGATTAAGGGACTCCAATGTACATTTGACAGAAGGAGAAAGATCAATCATTGAACAATTTGAGTCAGGTGTTTATGTCACCCTCGTTGTACTACCTAATGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAATGAGCAGCAAGCAGAAGAATGGTGGAACCAAAACAAAGATAAGGTGTATAGTAAATACATTCCACCACCACCCACAAAAAATGCAATTACTGAACCATCTGTTACCTCTACAAATGCTGAAGAGAATAGTGAGGCGTTACCTTCTTCCTAA 3153 0.4155 MADLSIFGSSERLEQAFITLKKGTQLVKYSRKGKPKFCSFRLSSDETKLIWISHGKEKNLKLAAVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEIWFSCLKALISSGERIKRGISDLSNDCVDFVAGTLEFASSISRSRFSFESASHESTSSWSRSDTNMAQRTSIGDGSRVSISSISHSSSVGSGLDDIESLGDVFIWGEVWGDGNSSDGLGSQASGKIDVLTPKALESDVVLDVNQIGPGVRHIALVTRQGELFTWGEDSGGRLGHGFEKDFGRPHLVESLAITNMSSVACGEYHSCAVSVSGDLFTWGDATNSAGLLGHGSDVSYCIPKRVSGALEGHQVVSVACGAWHSALATTLGKLFTFGDGRFGVLGHGDRECVSYPKQVQLLSGQKAIKVACGMWHSAAIIEIMDPSGSNPSSKKIFTWGDGDQYRLGHVNKENYLQPTCVAALADYSFNQIACGYTMTVALTVSGHVFTMGGTAYGQLGNPNSDGKVPILVRDKLVGEFVEEIACGANHVAVLTSRSELYTWGRGANGRLGHGDTDDQKTPTLVEALKDRHVRNIACGSTFTCCICLHKWLSGVDQSVCSDCRQPFGFTRKRHNCYNCGLVFCHPCSSKKASRAALAPTPSKPHRVCDACYAKLKGADSASNLNKEISRPSSYGREKFERAEVKSSRILLPPITEPIKYLEIRTIKHGNIDETSSMVRAAQVPISLQLKDVAFPISLSSAQNFFKPLIQSSHTQSPPPPIRPMSPYAKRRPPSPPRSTSPGFSRSLIDNLKKKSDHMTQEVSKLQNKNKSLKQKSETQEMKIQELQKVIEEESSKFREAKDFIKSMTDKLREVIETLQSEIPDNETLRTMHAQAEEFLNEEKRLEPSSSQLSLNSNPQSAPDVPASDSNSPKVVPSPDGENTFEETGNSSASSTAVSTPNSRNISRLRDSNVHLTEGERSIIEQFESGVYVTLVVLPNGYKVFKRIRFSKRRFNEQQAEEWWNQNKDKVYSKYIPPPPTKNAITEPSVTSTNAEENSEALPSS 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02692 1050 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 56 857 - -
Vian3g02692 1050 Coils Coil 794 842 - -
Vian3g02692 1050 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Vian3g02692 1050 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Vian3g02692 1050 FunFam PH, RCC1 and FYVE domains-containing protein 1 183 431 - -
Vian3g02692 1050 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 600 662 IPR017455 -
Vian3g02692 1050 Gene3D - 434 601 IPR009091 -
Vian3g02692 1050 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 322 IPR000408 -
Vian3g02692 1050 Gene3D - 145 433 IPR009091 -
Vian3g02692 1050 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 544 595 IPR000408 -
Vian3g02692 1050 MobiDBLite consensus disorder prediction 1030 1050 - -
Vian3g02692 1050 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Vian3g02692 1050 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Vian3g02692 1050 SMART fyve_4 595 663 IPR000306 GO:0046872
Vian3g02692 1050 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Vian3g02692 1050 PRINTS Chromosome condensation regulator RCC1 signature 380 394 IPR000408 -
Vian3g02692 1050 PRINTS Chromosome condensation regulator RCC1 signature 364 380 IPR000408 -
Vian3g02692 1050 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Vian3g02692 1050 PRINTS Chromosome condensation regulator RCC1 signature 539 560 IPR000408 -
Vian3g02692 1050 PRINTS Chromosome condensation regulator RCC1 signature 481 499 IPR000408 -
Vian3g02692 1050 Pfam Regulator of chromosome condensation (RCC1) repeat 271 319 IPR000408 -
Vian3g02692 1050 Pfam Regulator of chromosome condensation (RCC1) repeat 491 540 IPR000408 -
Vian3g02692 1050 Pfam Regulator of chromosome condensation (RCC1) repeat 378 426 IPR000408 -
Vian3g02692 1050 Pfam Regulator of chromosome condensation (RCC1) repeat 545 592 IPR000408 -
Vian3g02692 1050 Pfam Regulator of chromosome condensation (RCC1) repeat 442 488 IPR000408 -
Vian3g02692 1050 Pfam Regulator of chromosome condensation (RCC1) repeat 322 373 IPR000408 -
Vian3g02692 1050 MobiDBLite consensus disorder prediction 756 824 - -
Vian3g02692 1050 Pfam Transcription factor regulating root and shoot growth via Pin3 966 1020 IPR013591 -
Vian3g02692 1050 SUPERFAMILY PH domain-like 14 122 - -
Vian3g02692 1050 MobiDBLite consensus disorder prediction 795 824 - -
Vian3g02692 1050 SUPERFAMILY FYVE/PHD zinc finger 596 667 IPR011011 -
Vian3g02692 1050 SUPERFAMILY RCC1/BLIP-II 212 597 IPR009091 -
Vian3g02692 1050 MobiDBLite consensus disorder prediction 891 955 - -
Vian3g02692 1050 MobiDBLite consensus disorder prediction 759 785 - -
Vian3g02692 1050 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 377 IPR000408 -
Vian3g02692 1050 MobiDBLite consensus disorder prediction 888 956 - -
Vian3g02692 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 672 IPR013083 -
Vian3g02692 1050 Pfam FYVE zinc finger 596 661 IPR000306 GO:0046872
Vian3g02692 1050 MobiDBLite consensus disorder prediction 1016 1050 - -
Vian3g02692 1050 CDD PH_PLC_plant-like 12 123 - -
Vian3g02692 1050 Gene3D - 12 130 IPR011993 -
Vian3g02692 1050 ProSiteProfiles BRX domain profile. 966 1021 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02692 Vian-Chr3 41706925 41713165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02692 963 1044 Major Intrinsic Protein MIP AT1G31880 32.927 1.13e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02692 - - gmx:100778984 1604.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02692 3 41706925 41713165 Vian3g02692 3 41706925 41713165 ECH