Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02689 ATGGTTAGAGCTCCTTGTTGTGAGAAGATGGGATTGAAAAAGGGTCCTTGGACTCAAGACGAAGATCAAATCCTCATATCATACATCCAAAAACATGGCCATGGAAACTGGCGTGCGCTTCCAAAGCTTGCAGGGCTATTGAGGTGTGGAAAGAGTTGCAGACTGAGATGGATTAACTACTTAAAACCTGATATCAAAAGAGGAAATTTCTCGAGTGAAGAAGAAGAGATTATCATCAAGATGCATGAGTTGCTGGGAAATAGGTGGTCAGCAATAGCAGCAAAACTACCAGGAAGAACTGACAATGAAATTAAGAATGTGTGGCACACTCATTTGAAGAAGAAGTTGCTGAATTCAGATAGCAAAAGGGTTGTTTCAAATCCAAAAATCAAACGATCTGATTCTAATTCCAGCACCCTAACATCATCCTCAGCATGCACTTCTTCCAGTGATTTTTCATCATTCAGTGAAGAAAACAAAAGCACGAACAACAACAGCATGATCAAGAGTGAAGACACAGAGTCTGAGGAGACAACAATGCCTCCAATTGATGAAAGCTTTTGGTCAGAGGCAACAGTTGAAGATGAAAGCTCCACCATGATGATGCCATCAAATTCTTGGACAATTTCCAATGAACCACAATTTAATCATGTGGAAACTTTCCAACAACATAGTTTTGGTTATAATGGTTCAAACTTTGATGATGGCATGGATTTTTGGTATGACATATTCATCAGATCAGAAGAGTCAATAGAGTTGCCGGAGTTCTGA 771 0.3969 MVRAPCCEKMGLKKGPWTQDEDQILISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLNSDSKRVVSNPKIKRSDSNSSTLTSSSACTSSSDFSSFSEENKSTNNNSMIKSEDTESEETTMPPIDESFWSEATVEDESSTMMMPSNSWTISNEPQFNHVETFQQHSFGYNGSNFDDGMDFWYDIFIRSEESIELPEF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02689 256 CDD SANT 69 112 IPR001005 -
Vian3g02689 256 CDD SANT 16 61 IPR001005 -
Vian3g02689 256 MobiDBLite consensus disorder prediction 123 184 - -
Vian3g02689 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian3g02689 256 Gene3D - 13 66 - -
Vian3g02689 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 198 - -
Vian3g02689 256 SMART sant 66 114 IPR001005 -
Vian3g02689 256 SMART sant 13 63 IPR001005 -
Vian3g02689 256 MobiDBLite consensus disorder prediction 130 169 - -
Vian3g02689 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian3g02689 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian3g02689 256 Gene3D - 68 142 - -
Vian3g02689 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian3g02689 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian3g02689 256 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vian3g02689 256 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vian3g02689 256 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02689 Vian-Chr3 41693742 41695797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02689 1 256 MYB Transcription Factor Family AT2G31180 49.621 5.57e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g02689 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02689 K09422 - gmx:100806975 400.208