Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02685 ATGGATTCTTCTTCCATTCTCTATTCATCAAACTCTTCAGAATCTTCAGTGGGATCCCCTCATCACCATCTCCCTTTCAACGAAAATGATCCCGAAGAGATGCTTCTCTATGGCATGATCACATCATATCAAGAGCAAAACAACTCATGCAAACTCATCATCAAAGAAAAAGAGGTGAATTCACAACAACACAAAAGTAGTAGTGGTAATAGCAATGGTAAGAGTTTTCGAGGTGTGCGAAGACGACCATGGGGAAAGTTCGCGGCAGAGATAAGAGATTCTACTCGACATGGCATAAGGGTATGGCTTGGAACATTCGACAACGCCGAGGCTGCAGCGTTGGCGTATGACCAAGCTGCCTTTGTCATGCGAGGTTCTGCCGCGGTACTCAACTTTTCTGTGGAGAAAGTAAAGGAGTCATTGAGAGATATGGATTGCTCATTCTCTCAACTTGAAGGTTGTTCTCCCGTTGTAGCCTTGAAGAGGAGACATTCATTGAGACGCAAAATGACTACAAAGAAAAAAAAGGAAGAGACACAAGAGAGTGATAGTGTTAGGTTAGAAAACGTGGTTGTGTTGGAAGACTTGGGAAAAGAGTATTTAGAACAATTGTTAATGATGTCTTCTAGTGATGCTAGATGTACATGGTGA 651 0.424 MDSSSILYSSNSSESSVGSPHHHLPFNENDPEEMLLYGMITSYQEQNNSCKLIIKEKEVNSQQHKSSSGNSNGKSFRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDNAEAAALAYDQAAFVMRGSAAVLNFSVEKVKESLRDMDCSFSQLEGCSPVVALKRRHSLRRKMTTKKKKEETQESDSVRLENVVVLEDLGKEYLEQLLMMSSSDARCTW 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02685 216 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Vian3g02685 216 PANTHER DNA-BINDING DOMAIN 36 206 IPR044808 GO:0003700|GO:0009873
Vian3g02685 216 MobiDBLite consensus disorder prediction 59 78 - -
Vian3g02685 216 MobiDBLite consensus disorder prediction 1 22 - -
Vian3g02685 216 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Vian3g02685 216 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vian3g02685 216 FunFam Ethylene-responsive transcription factor 2 74 135 - -
Vian3g02685 216 Gene3D AP2/ERF domain 74 135 IPR036955 GO:0003700|GO:0006355
Vian3g02685 216 CDD AP2 76 132 IPR001471 GO:0003700|GO:0006355
Vian3g02685 216 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Vian3g02685 216 MobiDBLite consensus disorder prediction 1 28 - -
Vian3g02685 216 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Vian3g02685 216 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02685 Vian-Chr3 41636086 41636736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02685 24 216 AP2-EREBP Transcription Factor Family AT3G23240 60.104 2.86e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g02685 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02685 K14516 - gmx:100780576 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02194 2 41927704 41933428 Vian3g02685 3 41636086 41636736 PCT