Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02678 ATGGAAGAAGAAGGTTCAAAGGGAAAAGCGAAGGATGAAGAAGAGCATGTAAAGTACAGAGGAGTACGTAGAAGGCCATGGGGAAAATATGCAGCAGAGATTCGTGACTCAATGAAACATGGTCAAAGGTCGTGGCTGGGAACATTCACCACAGCAGAGGATGCTGCTAGAGCCTATGACAGAGCTGCATATGCCATGAGAGTGATATCTGTTGTGTAG 219 0.4612 MEEEGSKGKAKDEEEHVKYRGVRRRPWGKYAAEIRDSMKHGQRSWLGTFTTAEDAARAYDRAAYAMRVISVV 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02678 72 ProSiteProfiles AP2/ERF domain profile. 18 72 IPR001471 GO:0003700|GO:0006355
Vian3g02678 72 SUPERFAMILY DNA-binding domain 18 67 IPR016177 GO:0003677
Vian3g02678 72 PANTHER DNA-BINDING DOMAIN 11 67 IPR044808 GO:0003700|GO:0009873
Vian3g02678 72 SMART rav1_2 18 71 IPR001471 GO:0003700|GO:0006355
Vian3g02678 72 Gene3D AP2/ERF domain 17 71 IPR036955 GO:0003700|GO:0006355
Vian3g02678 72 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vian3g02678 72 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vian3g02678 72 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02678 Vian-Chr3 41494528 41495487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02678 15 67 AP2-EREBP Transcription Factor Family AT5G43410 84.906 5.22e-28 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g02678 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02678 - - gmx:100775830 102.064