Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02677 ATGGATTTTGTTAGCCAAAGACACCTACTTCATTTACCAATACAAGCTGATTCACCTTGCACAGTTCCTCAAAATCATGATATTCCTCATCCTTCTGGTTCAAATCTTCCCCTCTTAGCAATCCTTGTGCTAGGAATGATGTTCACAACTTTCTTCCTTATAGGCTACTACATGTTAGTTGTCAAGTGCTGCTTCAGTTGGCCCCATGTTAATCACACAAGACTATTTTCTCTGTCCAGACAAGGTGAAGATCCATCTGCTGGATTCTCAGCAGCATCCGAGCCAAGAGGGCTAGAGGAAGCAGTTATCAGGTTAATCCCTGTGATTCATTACAAGCCAGAAAAAGGGGATACAAACTTTGGTGAAAGAAGCAACCTTGATGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAACACTCATTGCCCTCTCTGCAGAAGAATTGTGTCCTTGACAAGTCAGGTCCATGTTGACCAACCAAACCTTCTCGTTCCAAGGCCTTCATCTCAAGACCAAAGCCAAAACATTGAAAACAATGTCAGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAACTTGATAGAGACCAAAACCTGGAAGGAAGACAAGATTTACCTACCATTGCTGTTTCTTCACAGAAGAATGCAAAGAAGCTTCATAAAGTGATCAGCTTGGGAGATGAGTGTATTGGCATCAGAGCCAAAGGTGAAAGCTTTTCATCAGTTCAAGCCATGAGGAGGTCCTTTTCCATGGATTCATCAGTGGATAGAAAGTTTTATGGGGCAATTCAGCAGGTTTTACAGCAACAACAACAACATGAACATGTTCATGAGATTAACACAGTTGAAGCCTGTGATGGAAATGACAGAGTGAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAATGCTGTACAACCTGTTGATTTGGACCCCTGA 1026 0.4152 MDFVSQRHLLHLPIQADSPCTVPQNHDIPHPSGSNLPLLAILVLGMMFTTFFLIGYYMLVVKCCFSWPHVNHTRLFSLSRQGEDPSAGFSAASEPRGLEEAVIRLIPVIHYKPEKGDTNFGERSNLDDCAVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNTHCPLCRRIVSLTSQVHVDQPNLLVPRPSSQDQSQNIENNVSDEGFVVIDLDGELDRDQNLEGRQDLPTIAVSSQKNAKKLHKVISLGDECIGIRAKGESFSSVQAMRRSFSMDSSVDRKFYGAIQQVLQQQQQHEHVHEINTVEACDGNDRVKRSFFSFGHGSRSRNAVQPVDLDP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02677 341 CDD RING-H2_EL5-like 128 171 - -
Vian3g02677 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 175 IPR013083 -
Vian3g02677 341 SMART ring_2 129 170 IPR001841 -
Vian3g02677 341 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vian3g02677 341 FunFam E3 ubiquitin-protein ligase ATL6 87 177 - -
Vian3g02677 341 PANTHER RING-H2 FINGER PROTEIN ATL16 22 337 IPR044600 GO:0016567|GO:0016740
Vian3g02677 341 Pfam Ring finger domain 127 171 IPR001841 -
Vian3g02677 341 SUPERFAMILY RING/U-box 112 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02677 Vian-Chr3 41487225 41488250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02677 32 341 C3H Transcription Factor Family AT1G04360 38.136 1.02e-65 210
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02193 2 41922975 41923898 Vian3g02677 3 41487225 41488250 PCT