Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02671 ATGGAGGAAGAAGAACCTTCCATAACATCACCACCTCCAGGAAGGTTACACAAGTTCCTCTTCCGCGGTGGCAAGCCTGTCATCGCCGCGAAGCCTCTCACTGTGGTCCGCTCCACCACCAGCAACGGCGGCGCGCGCGTTCTTGCCTCGCAGCCAAACCCTAACGAGAACGATGCTCTCCAAGAAGAAGGACAAGGTGAAACCGGCTTCGATGTTTCTTATTTCAACGCACTGAGCAAAAGGCAACAACAACAACGACAAAGGCTCGAGGAGTTTCTCAAGGGCACGAACACGAAGGTCGCTTCCAAAGGAGAGTCTTTGAAATCGATGGCGCCATTGGAAGAAGAAGTAGAAGAAGAGGAGGAGGAAGGCGATGAGGCAGAATCAACTCCACCGGTTCAACCGGTTAGGATAGTGTCGGAACCGGTTCCACCGGTGCAGACAACAGAGGTTAGTGATGATGTGGAGGTGGTGGCGGTGCGCAAGGATGTGGAGAAGAGGAATATTCCTAATCTCGAGGACGGGGAGTTTCCGGAGGAGGCTGGATGGTTCTTGCTTGGGAGGAAGGCTGAGGTTGCGGTTTCGACTGCCAGAGGAGTGCGGAGATTGGTGGACAATGAAATCGTTCATTTCAACTTTCCTCTGCCGACTTACTCGAGAAAGTCTCAGTTGATCGTTCGTGTTTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAGTGGGCAAAGATTGTGATTCCACTTATGCGCTCTGGAAAGATCAAGGTTCGAGGCCGATGCATTGCTGCCCCAGATAAACTGGAGATGATGCAAGAGATTCTGTTTTTAGTGAGCTTTTATATTCACAACTCTGTGTTTGCCGACCGTGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATGTACCCAATTCTTGCCCTATTAAAAATGCTAGAGATCAAGCCATCTCGAAAGGCTGAATTCATGCCAGAAGATATAGATTCTCGAAAGCGGTTGCTCTATCCAAGGGCTGGGTCAGATGAAGCTGCAGCATTGCATTTGATCAAGCGAAGAAAGGGTAGCGAGCCTATTCCCGAGCAAAATAATGACGAACAAGCTCTTTCAGAGTCAGCTTTAAACAAAATTGTTGGAGCTGCAGAAATCTATGACTTAAAGGAGAAGGAAGCCCCAAAGACACTTATGTGTAATCTAAAGCCTTACCAGAAGCAGGCCCTGTATTGGATGGATGAAATCGAGAAGGGAATGGATGTTGAAAGTGCAGAAAGAACTCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGCAGAAGGACTATTTATGTCAATACATTTACCGGAGAAGCTTCAAAGAAATTTCCCAAAACAACTGAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCTCTGATACTCAGTAATCCAGGCCGAGGCAACTCAGAAAACAAGGATGCAATAAATGGACACGATGATATTATAGCAAATAAAAGGAAGAACGCTTACGCGATGCATAAAGTCGAGGGTGGCACTCTAATTGATGAGCTTGAAACGCATTCAAAGCGCGGTAGTATATCCATATTTGTTCATTATGGTGGCAGAAGAACCGATGATCTCTTGTTCATCTCTGGGCATGACGTTGTCTTAACAACTTATGGTGTCCTATCAGCTGAATACAAAAATAATGGAGGCAATAGCATCTACCACAAGATCCAATGGTACAGGGTGGTGCTGGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGGTTTCCCAGGCTGCTTTTACTCTCTCAGCACACAGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTGGAGGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAAAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAAATCCCTGAAGCTGGTCAAAGCCATTTTGAGGATGCTAATGCTAAGAAGAACGAAGGAATCGAAAGATAAAGAGGGAAGGCCTATACTTCTTCTGCCTCCAATTGACATCGAATTGATTGAATGTAAACAATCAGAGTGTGAACGTGACTTCTACGAAACCCTTTTCGAGCGATCTAAAGTTCAATTTGATCAGTACGTTGCACAAGGAAATGTTCTACACCATTATGCCAATATCCTTGACCTTCTAATGCAGTTGAGACGCTGTTGTAACCATCCGTTTTTGGTTATGTGCGGAAGCGATTCCCGTAAGTATGCAGACTTAGGCAGAATCGCAAGAAGATTTCTTCAGTCTGATACTGGTTCACCCAACGAAAGCAATCAAGATGATCCACAGCTGAAAGCAGAGGTGAACAAACTCGCAAGTATATTACTTAATTCCGCTTCTCCGGACTCTATCCAACCTCGTGCATACATTGAAGAGGTTTTGGAGAATATTCAAAAGGGCGATCCTGGAGAATGCGCAGTATGTTTGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCTCATAAATTTTGTAGAGAATGTCTGTTCAGTTGCTGGGGCACCCCCGCGGGTGGCCAATGTCCAATGTGTCGTAATTTGCTCCAGAAAGATGATCTGATCACTTGTCCGTCTGAAAGCCCATTCGAGGTCGATATTAAGAACAATGTGACAGAGTCTTCGAAGTTTTCAAAGCTATTCGAATTCCTGGAGGGTATTCTGAACTCACCCGCGGGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTCTTGGAGAATCCATTGAGGCGGAGGGGCATTGGCTTTTTGAGATATGATGGAAAATTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATAAAACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTAAAGGCTGGTGGTGTAGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATAATGCAGGACACAGTGGAAGATCGTTTGCAACAAGTGCAGGCCAGAGAACAGAGGATGATATCTGGCACCTTCACCTATGATGAGGTTCGGTCTGCTCGGATCCAAGACCTCAAAATGCTATTCACGTATGATTGTGGAGTTATTGTTTTGAGATTTATGGAGTTGTGGGATGTCGCCGAGGAATATGAAAACAACACAATGCCCACTTAG 3216 0.4571 MEEEEPSITSPPPGRLHKFLFRGGKPVIAAKPLTVVRSTTSNGGARVLASQPNPNENDALQEEGQGETGFDVSYFNALSKRQQQQRQRLEEFLKGTNTKVASKGESLKSMAPLEEEVEEEEEEGDEAESTPPVQPVRIVSEPVPPVQTTEVSDDVEVVAVRKDVEKRNIPNLEDGEFPEEAGWFLLGRKAEVAVSTARGVRRLVDNEIVHFNFPLPTYSRKSQLIVRVSTKRSGEVGRMPMEWAKIVIPLMRSGKIKVRGRCIAAPDKLEMMQEILFLVSFYIHNSVFADRVDTSWRLEACGKIDDTMYPILALLKMLEIKPSRKAEFMPEDIDSRKRLLYPRAGSDEAAALHLIKRRKGSEPIPEQNNDEQALSESALNKIVGAAEIYDLKEKEAPKTLMCNLKPYQKQALYWMDEIEKGMDVESAERTLHPCWSAYTICKGRRTIYVNTFTGEASKKFPKTTEMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDAINGHDDIIANKRKNAYAMHKVEGGTLIDELETHSKRGSISIFVHYGGRRTDDLLFISGHDVVLTTYGVLSAEYKNNGGNSIYHKIQWYRVVLDEAHNIKAHRSQVSQAAFTLSAHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYENGDPKSLKLVKAILRMLMLRRTKESKDKEGRPILLLPPIDIELIECKQSECERDFYETLFERSKVQFDQYVAQGNVLHHYANILDLLMQLRRCCNHPFLVMCGSDSRKYADLGRIARRFLQSDTGSPNESNQDDPQLKAEVNKLASILLNSASPDSIQPRAYIEEVLENIQKGDPGECAVCLESPEDPVFTPCAHKFCRECLFSCWGTPAGGQCPMCRNLLQKDDLITCPSESPFEVDIKNNVTESSKFSKLFEFLEGILNSPAGEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNKTREKRVLLMSLKAGGVGLNLTAASNVFIMQDTVEDRLQQVQAREQRMISGTFTYDEVRSARIQDLKMLFTYDCGVIVLRFMELWDVAEEYENNTMPT 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02671 1071 Gene3D - 458 694 IPR038718 -
Vian3g02671 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 832 887 IPR013083 -
Vian3g02671 1071 Pfam SNF2-related domain 407 760 IPR000330 GO:0005524|GO:0140658
Vian3g02671 1071 SMART helicmild6 940 1022 IPR001650 -
Vian3g02671 1071 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 217 1044 - -
Vian3g02671 1071 Gene3D - 698 1023 IPR027417 -
Vian3g02671 1071 SMART HIRAN_2 186 283 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vian3g02671 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 1046 IPR027417 -
Vian3g02671 1071 CDD DEXDc_SHPRH-like 404 682 - -
Vian3g02671 1071 CDD SF2_C_SNF 901 1003 - -
Vian3g02671 1071 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 909 1071 IPR001650 -
Vian3g02671 1071 SMART ultradead3 400 661 IPR014001 -
Vian3g02671 1071 Pfam Zinc finger, C3HC4 type (RING finger) 839 878 IPR018957 GO:0046872
Vian3g02671 1071 ProSitePatterns Zinc finger RING-type signature. 854 863 IPR017907 -
Vian3g02671 1071 Pfam HIRAN domain 194 276 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vian3g02671 1071 ProSiteProfiles Zinc finger RING-type profile. 839 879 IPR001841 -
Vian3g02671 1071 MobiDBLite consensus disorder prediction 114 128 - -
Vian3g02671 1071 MobiDBLite consensus disorder prediction 41 62 - -
Vian3g02671 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 682 IPR027417 -
Vian3g02671 1071 SUPERFAMILY RING/U-box 824 884 - -
Vian3g02671 1071 MobiDBLite consensus disorder prediction 96 138 - -
Vian3g02671 1071 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 461 644 IPR014001 -
Vian3g02671 1071 SMART ring_2 839 878 IPR001841 -
Vian3g02671 1071 Pfam Helicase conserved C-terminal domain 916 1004 IPR001650 -
Vian3g02671 1071 Coils Coil 110 130 - -
Vian3g02671 1071 MobiDBLite consensus disorder prediction 41 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02671 Vian-Chr3 41440321 41448812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02671 133 1043 RAD5 or RAD16-like Gene Family AT5G43530 55.983 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian3g02671 SNF2_N 8.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02671 K15505 - gmx:100806677 1620.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02671 3 41440321 41448812 Vian3g02671 3 41440321 41448812 ECH