Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02666 ATGTTGAAGTCAGTGTCATTTGGACTGTTGTTAACTTGGTTTGTGGTGGTGACATGTGTGTATGGAACAGATGTTCAAAGATGTAACTGTGATGATGAGTGGAGCTTCTGGACTATTGATACCATTCTGGAGTGCCAAAGGGTTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCTGTTGAGCTGCTTTACTTTGTTAGTTGCTCAAATCTCCCATTCAAATGGGTCCTCTTTGAGTTCATTGCTTTCATTGTACTTTGTGGGATGACACATTTGCTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTGATGGTGGCAATCACTGTGTTCAAAATTCTCACTGCCTTGGTGTCATGTGCCACTGCTCTAACTCTCCTCACTCTGATCCCTCTGCTGTTGAAAGTGAAGGTTAGGGAGTTTATGCTGAAGAAAAAGACCTGGGATCTTGGCAGGGAGGTTGGCTTCATAATGAAACAGAAGGAGGCTTCGGTTCATGTAAGAATGCTTACTCAAGAGATTCGAAAGTCCTTGGATAGGCACAAGATTCTGTACACCACCTTGGTTGAACTCTCCAAGATACTTGGTTTGCAAAACTGTGCAATTTGGATGCCAAATGATGAGAAAACTGAGATGAACCTTACTCATGAATTGAATGGGAGGAATGCCAACTGTTCTATTCTCATAACTGATCCTGATGTTGCCAGAATCAAGGGGAGTGATGAAGTGAACGTGATTGATTCTGATTCAGTGCTTGCCACTGCCAGCAGTGGAGATTCTGGTGTGGCAGGACCAGTTGCTGCAATCCGAATGCCAATGCTTCGGGTTAGCAATTTCAAAGGGGGAACGCCGGAGCTGAGGCAAACATGTTATGCCGTGTTGGTTTTGATTCTCCCTGTCACTGAGGCTAAATCATGGAGCACTCAAGAGCTGGAGATCATCAAGGTGGTTGCTGATCAGGTGGCGGTGGCTCTGTCTCATGCTGCAATTCTTGAAGAGTCTCATATGATGAGAGGGAAGTTGGAGGAACAAAATCGAGCATTGCAAGTGGAAAAGATTAATGCTATGAGGGCCAACCAGGCCAGAGCAGCATTTCAGAAAGTGATGAGTAATGGAATGGGAAGGCCTATGCACTCAATCTTGGGGCTGCTTTCAGTGATGCAGGAAGAGAATTTAAAGCGAGAACAGAAACTCGTTGTGGATTCTATGTTCAGAACCAGCACTGTCATGTCAAACCTGCTGAATGATGCCATGGACTGGTCATCAAGGGATGATGGAAGATTCCCTTTGGAGATGAAGCCTTTTGGACTGCATGCTATGGTGAAGGATGCAGCTTGCTTTGCCAGGTTCATGTGTGTTTATAGTGGCCTTGGCTTTGTTGTTGATGCTGATAAGTCTTTGCCAGACAATGTTATAGGTGAGGAAAAGAGGGTCTTCCAAGTGCTTCTGCATATGGTTGGGAGTGCAATAAATTGTAACCGAGGAGGAGGGGTTCTTGTGCTCCGAGTTTATGCAGAAACTGGAAGTCAAGGGAGGAGTGACCAGGGTTGGACAAATTGGAGACCAAGCTCTTCAAATGGGGATGTAAATATCAGATTTGAGATAGGGATCAATACTGGTGATTCTGAAATGGACAATCCAGTTCCTTCAGGGCACCTTCCTGGTACAATGCGTGCTACTGATACGGTTGAGCAAAGATTGAGCTTCAGCATTTGCAAGAGGATAATTCAGTTGATGCAAGGAAACATATGGTTTGTACCAAACGGTGAAGGTGATCCTCAGGTAATGGCCATTTCTCTACGGTTTCAAGTGAAGCGATCTGTTGCTGTGTCCATGAGTGAAACTGGGGAAAGTTCTGAGGCGTCAAATTCGAACTCATTTTTCAGAGGTCTACAAGTGTTGTTGGTGGAGAACGATGATGTAAATAGAGCAGTGACTCAGAAGTTGCTGCAGAAACTAGGGTGCTGTGTGACTTGTGTTTGTTCTGGAATTGAATGTCTGAGTGTGATTGGAGCTGGTGGATGCTCCTTTCAAGTGATTGTTTTGGATCTTCACATGCCTGAGCTTGATGGGTTTGAAGTTGCATCAAGGCTTCGCAAGTTCGGCAGCAGAAACTGGCCGGTGATTGTGGCCTTGACTGCAAGCACAAAAGATTTCTGGGAAAAATGCATGCAAGTTGGCATCAATGGAGTCATAAGAAAACCGCTTTTGCTGCATGGAATTGCCGCTGAACTCAGAAGAATCCTGTTGCAGGGAAATACTGTCATGTGA 2280 0.4513 MLKSVSFGLLLTWFVVVTCVYGTDVQRCNCDDEWSFWTIDTILECQRVGDFLIAVAYFSIPVELLYFVSCSNLPFKWVLFEFIAFIVLCGMTHLLNGWTYGPHTFQLMVAITVFKILTALVSCATALTLLTLIPLLLKVKVREFMLKKKTWDLGREVGFIMKQKEASVHVRMLTQEIRKSLDRHKILYTTLVELSKILGLQNCAIWMPNDEKTEMNLTHELNGRNANCSILITDPDVARIKGSDEVNVIDSDSVLATASSGDSGVAGPVAAIRMPMLRVSNFKGGTPELRQTCYAVLVLILPVTEAKSWSTQELEIIKVVADQVAVALSHAAILEESHMMRGKLEEQNRALQVEKINAMRANQARAAFQKVMSNGMGRPMHSILGLLSVMQEENLKREQKLVVDSMFRTSTVMSNLLNDAMDWSSRDDGRFPLEMKPFGLHAMVKDAACFARFMCVYSGLGFVVDADKSLPDNVIGEEKRVFQVLLHMVGSAINCNRGGGVLVLRVYAETGSQGRSDQGWTNWRPSSSNGDVNIRFEIGINTGDSEMDNPVPSGHLPGTMRATDTVEQRLSFSICKRIIQLMQGNIWFVPNGEGDPQVMAISLRFQVKRSVAVSMSETGESSEASNSNSFFRGLQVLLVENDDVNRAVTQKLLQKLGCCVTCVCSGIECLSVIGAGGCSFQVIVLDLHMPELDGFEVASRLRKFGSRNWPVIVALTASTKDFWEKCMQVGINGVIRKPLLLHGIAAELRRILLQGNTVM 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02666 759 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vian3g02666 759 SMART REC_2 634 748 IPR001789 GO:0000160
Vian3g02666 759 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vian3g02666 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 591 IPR036890 -
Vian3g02666 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vian3g02666 759 ProSiteProfiles Response regulatory domain profile. 635 752 IPR001789 GO:0000160
Vian3g02666 759 Gene3D - 613 751 - -
Vian3g02666 759 Gene3D - 428 611 IPR036890 -
Vian3g02666 759 CDD HATPase_ETR2_ERS2-EIN4-like 470 603 - -
Vian3g02666 759 FunFam Ethylene receptor 4 331 425 - -
Vian3g02666 759 Gene3D - 330 427 - -
Vian3g02666 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 754 - -
Vian3g02666 759 Gene3D - 162 329 IPR029016 -
Vian3g02666 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 430 IPR036097 GO:0000155|GO:0007165
Vian3g02666 759 CDD REC_ETR-like 634 748 - -
Vian3g02666 759 Pfam Response regulator receiver domain 636 739 IPR001789 GO:0000160
Vian3g02666 759 SMART gaf_1 182 338 IPR003018 GO:0005515
Vian3g02666 759 SUPERFAMILY GAF domain-like 185 331 - -
Vian3g02666 759 SUPERFAMILY CheY-like 631 752 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02666 Vian-Chr3 41358362 41360830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02666 24 752 Miscellaneous Gene Families AT3G04580 54.032 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian3g02666 GAF 3.7e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02666 K14509 - gmx:100802948 1201.81