Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02654 ATGTTGCAGGATGTTATCCAACCCCCAACACCAGATGAGCAACAACTCCCCATTGATGAGATTTCAAGCCCAATCAGTGCTCGATATTTCGAACTTTGTGACCCTGATTTTTTCCAAGACACACTGCAAAATTCTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGACAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATGCAGTAGACAACAAGATCAATATCAATATCAATAGCAACATAGTCACCACCTCATCTAGTACTACCACAGCCAGCACCACTACCAACAACAACAACCTCAACAACAACAACAACACAACAAACAGCAATAACCTGTCTCTCTTCTTTGACTCTCCAGATGATCCTGACAATGACATATCAGCCTCCATAAACTTCTCACCATCTCCTTCTTTTGTTGTTCCACCACTTCTCCCAATCACAACTCAGCAGGATCACTTTGATTTCTCTTCAGCTCAGCAACTATCTGCATCAGGTTCAGTTTTGAAGGGCCTCTCTCAGTACCCTACTGATCCTGTGGTTGCACCCCTTATTGGGGCTCCATTAGCCTCAGTTTTTGATGATGATTGCATCTCTTCCATCCCTTCTTATATGCCTCTCAACCCTTCATCTCCCTCTTGCTCTTATCTCAGTCCTGGCATAGCAGCCTACATGCCTCCTCCTGGTTCCCTTACCACTGCGTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTTGGGTCTGAACTGCAGGCACAAGAATTGGACTACCAGGGAGAAAATGGTGGAATATATTGTACAGATTCAATTCAGAGGGTGTTTAACCCCCCAGAACTTCAGGCACTTGGTAATGAGAGTCAGAAACTGGTATCTGCTGGGGGCTCTGGCACTTTGGCACCAGAAATTTCACACTTGGAGGACTCTACCTTGAAGGTTGGAAAACTTTCTGTCGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAACTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTGGCAGATAGCAGGCCACGGGTCAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGACAGCCATAGACAAGGAAGTAGCAACCATGAAGAAGATGATGAAGAGATAATTGTGAAAGAAGATGATGATTTGGTCGATTCCTCAGATATCTTTGCACATATCAGTGGGGTGAACTCTTTCAAATGCAACTATTCCATTCAGTCCTTGATTTGA 1269 0.4374 MLQDVIQPPTPDEQQLPIDEISSPISARYFELCDPDFFQDTLQNSEVTSSSNCCHEDKSSYATTISPPLDAVDNKINININSNIVTTSSSTTTASTTTNNNNLNNNNNTTNSNNLSLFFDSPDDPDNDISASINFSPSPSFVVPPLLPITTQQDHFDFSSAQQLSASGSVLKGLSQYPTDPVVAPLIGAPLASVFDDDCISSIPSYMPLNPSSPSCSYLSPGIAAYMPPPGSLTTALSADSSGLFGGNILLGSELQAQELDYQGENGGIYCTDSIQRVFNPPELQALGNESQKLVSAGGSGTLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDSHRQGSSNHEEDDEEIIVKEDDDLVDSSDIFAHISGVNSFKCNYSIQSLI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02654 422 MobiDBLite consensus disorder prediction 88 109 - -
Vian3g02654 422 Pfam CCT motif 325 367 IPR010402 GO:0005515
Vian3g02654 422 ProSiteProfiles CCT domain profile. 325 367 IPR010402 GO:0005515
Vian3g02654 422 MobiDBLite consensus disorder prediction 361 385 - -
Vian3g02654 422 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 118 380 IPR045281 GO:0009909
Vian3g02654 422 MobiDBLite consensus disorder prediction 361 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02654 Vian-Chr3 41230731 41234604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02654 325 383 C2C2-CO-like Transcription Factor Family AT5G57660 46.875 1.25e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian3g02654 CCT 5.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02654 - - gmx:100793417 645.195