Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02653 ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGAGCCCGTCGTGTCCAGGAACTCTGGTCTTCTCTTCGAGAAGCGTTTGATCGAGCGACACATTTCGGATTATGGCAAGTGTCCAATTACTGGCGAACCACTTACTATGGATGACATTGTACCAATCAAGACAGGGAAGTTCCCTTGCAGTGTACTGATCAAATCAGGATCATTTGTGCAGATAGTGAAGCCCAGACCTGTCCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGTTATCTAATTTTGCATTGGAGCAACAATTGCACACGGCAAGGCAAGAGCTTAGTCATGCTCTCTACCAGCATGATGCTGCATGCCGAGTGATTGCTAGACTTAAAAAGGAACGAGATGAAGCTAGGTCCTTACTTGCGCAAGCAGAAAGGCAGTACCCTGTTTCTGCACTAAATGCTCCAACTGCAAATGCCCCTGTTCTGAGCAATGGAAAAAGAGCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCGTAATTTCTGAGCTAACTGATTGCAATGCTGCTCTCTCCCAGCAGAGAAAGAAGAGACAGATTCCTGCCACTTTGGCTCCTATTGAAGCTCTGGAGTCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAAGGCATTATATCCCTTGATATCCATTGTTCTAAGGACTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGATCTTCAGGACAGATATTATCTACACTAAGTGGTCACTCCAAAAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGTGAATCAATCTTAACTGGTTCAGCAGATAAGACAGTTCGTCTGTGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCACATCTTAAAGGATCATACAGCTGAGTTGCTGCAAGTCTCTGCAATGCATTCTGTGTATACTTCCTACTTTGCGGAAGCCATTTCCCATGATTTGTGCTTCATCTTGGATTTGGATTTTGGAAATTTCACCATAGATAACTTCCCTAGTCCAGTGCAAGCTGTCACTGTCCATGCTACCAATAATTATTTTGTGACTGCTTCACTTGATGGCTCTTGGTGTTTTTATGAACTTTCTTCAGGGACATGTTTGACTCAGGTTTTCGACTCTTCAGGTTCTTCTGAAGGCTACACATCAGCCGCTTTCCATCCTGATGGTCTCATCCTTGGAACTGGTACCACAGAATCTCTTGTTAAGATTTGGGATGTAAAAAGCCAGGCAAATGTTGCTAGGTTCGATGGACATGCTGGTCCAGTAACTGCCATTTCTTTTTCTGAGAACGGATACTTCCTTGCGACTGCTGCTCACGATGGTGTTAAGCTTTGGGATCTACGGAAATTGAAGAACTTTAGGAATTTTGCTCCATATGATTCGGAAACACCAACAAACTCTGGTATTCATCTTCAGTTGTCGATGACCTTATTGGAGTTCGACCACAGTGGATCCTACCTTGCAATTGCTGGCTCGGATATAAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGTATTAAAACCTTCCCCGATTTATCCGGAACAGGTAAGGCCACGTGTGTAAAATTTGGTGCAGACTCTAAATACATAGCTGTTGGATCAATGGACCGGAATCTTCGAATATTTGGCTTGCCTGGCGAAGATGCTCCCACTGAGTCATAA 1776 0.4381 MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKFPCSVLIKSGSFVQIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQYPVSALNAPTANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSVISELTDCNAALSQQRKKRQIPATLAPIEALESYTQISSHPFHKTNKQGIISLDIHCSKDLIATGGIDTNAVIFDRSSGQILSTLSGHSKKVTSVKFVAQGESILTGSADKTVRLWQGSDDGNYNCRHILKDHTAELLQVSAMHSVYTSYFAEAISHDLCFILDLDFGNFTIDNFPSPVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVFDSSGSSEGYTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSGIHLQLSMTLLEFDHSGSYLAIAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGADSKYIAVGSMDRNLRIFGLPGEDAPTES 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02653 591 Coils Coil 129 149 - -
Vian3g02653 591 Gene3D - 360 582 IPR015943 GO:0005515
Vian3g02653 591 Gene3D - 215 359 IPR015943 GO:0005515
Vian3g02653 591 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Vian3g02653 591 SMART WD40_4 356 395 IPR001680 GO:0005515
Vian3g02653 591 SMART WD40_4 443 481 IPR001680 GO:0005515
Vian3g02653 591 SMART WD40_4 269 308 IPR001680 GO:0005515
Vian3g02653 591 SMART WD40_4 540 581 IPR001680 GO:0005515
Vian3g02653 591 SMART WD40_4 224 266 IPR001680 GO:0005515
Vian3g02653 591 SMART WD40_4 496 533 IPR001680 GO:0005515
Vian3g02653 591 SMART WD40_4 399 440 IPR001680 GO:0005515
Vian3g02653 591 SUPERFAMILY WD40 repeat-like 234 580 IPR036322 GO:0005515
Vian3g02653 591 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Vian3g02653 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 58 IPR013083 -
Vian3g02653 591 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Vian3g02653 591 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 490 IPR001680 GO:0005515
Vian3g02653 591 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 450 483 - -
Vian3g02653 591 CDD RING-Ubox_PRP19 1 54 - -
Vian3g02653 591 CDD WD40 240 580 - -
Vian3g02653 591 SUPERFAMILY RING/U-box 1 53 - -
Vian3g02653 591 SMART Ubox_2 1 63 IPR003613 GO:0004842|GO:0016567
Vian3g02653 591 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 443 - -
Vian3g02653 591 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 327 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Vian3g02653 591 Pfam Prp19/Pso4-like 80 145 IPR013915 -
Vian3g02653 591 Pfam WD domain, G-beta repeat 446 481 IPR001680 GO:0005515
Vian3g02653 591 Pfam WD domain, G-beta repeat 270 307 IPR001680 GO:0005515
Vian3g02653 591 Pfam WD domain, G-beta repeat 541 580 IPR001680 GO:0005515
Vian3g02653 591 ProSiteProfiles U-box domain profile. 1 84 IPR003613 GO:0004842|GO:0016567
Vian3g02653 591 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 449 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02653 1 591 U-box Gene Family AT1G04510 65.482 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02653 K10599 - gmx:100527039 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02653 3 41192888 41200304 Vian3g02653 3 41192888 41200304 ECH