Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02638 ATGACCCAAATGGTTTTTTTGCCAAGATTGAAGCGCGGAAAGCGATATTCGACGGGGAAGATGGCGGCTGGGGACGAGGACAGAGGTTTGTGGTGGTTCTGGTCGACGAGGTTGCGGCGGTCGTCCTCCTCGTCGGAGGAGTCCATGTGCATTAGTATGTTGTTGGCCACGACGGCTATTGAGTTGGGGATGAGTGAACGAAGTGAGTCGAGAGGGGTGTGTCGGTTGTGCGTGGAAGGAGACGGAGTGAAAGATGCAGGGAAGGGAAACTTATTCCCTCCACATCTATCCGAAACCAAATTCCCTCCTTCCCTCGTTTTCTGCTCTCGCCTCCTCTACGCTCCTAACTCCCTCTTTTCCTTCCAAACCCTTTTCCCCACTCTTTCTCTCTCTAAACCTCACTTTCTCTCTCTAAAACCCTACTTTCCGCCCATCCTCCCCCTTTTCCCTCTAAATTCCCCCCAATTTCGCTCCGCCCCTCGCCCCATGTCCACCGCCGCCGGACCTCCCGACCGCCGTGCCTCGCCGCCGCGGGGGACTGCCGGCACCACTATCCGCCCCGCCCTCAAGCGCCACCTCGCTTTCGTCACTAAACCGCCCTTTGCTCCCCCGGACGACTACCACAGCTTCTCCTCCATCGACTCCCGCCGCCTTGCCGATGAAGCCGTTGTCGTTAGATCTCCAGTGAGTACATCGGTTTCCTCTGCCCGGTCTCAAATTCACCTCCGCGGCTCTCGAATCTGGAATGTCCTCTTCTGCGTTGAATGCGATTACATGAAGCGAAAGGGTGGAATGAATGATAGTGAAGGAGAGTCTCACACACAGAAGTGGAGTAACAGTCCTGGATACACTAATGTTAGTAACATAACGAATAGTCCCTTTAAAACTCCAGTGTCTGCAAAAGGAGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCCCACACCCATCTCAAATGCTGGTTCCCCGTCTCCTCTTACTCCTGCCAGCAGCTGCCGTTATGACAGTTCCTTAGGTCTCTTAACCAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGATCTAAATAAAGCAGCCGAGACTTTGGAGGTGCAAAAGAGGAGGATTTATGACATAACGAATGTTTTAGAAGGCATTGGTCTCATTGAAAAGAAACTCAAAAATAGAATACATTGGAAGGGAATTGAATCTTCCACGTCTGGTGAGGTGGATGGTGATATATCTGTGCTTAAGGAAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGATTGAGAAAGCTGAGTGAAAATGAAAATAACCGGAAGTGCCTTTTCGTGACCGAGGATGATATTAAGAGCCTACCTTGCTTCCAGAATGAAACTTTAATAGCAATTAAAGCTCCGCATGGAACTACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCTCAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTCATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAACGGTGCTGAGCTCCCTATGATCCCACTTGCTTCCAGTTCTGAGTCCAACGAACAAGTAATGACAGAAATGGTTCCTGCCGAATGCAGCGGAAAAGAATTTGAACCTCAAACTCAGCTGTCTTCTCATGTATACTCCGATATAAATGCTTCACAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGACGCTGATTATTGGCTTCTATCAGATGCTGACGTTAGTATAACAGATATGTGGAGAACAGACTCTACTGTTGATTGGAATGGGGTGGACATGCTTAATCCTGATTTTGGAATCATTTCGAGACCTCAAACTCCATCATCAGGGTTTGTGGAAGTGCCAACACCAGGAGCAAATTCGAATCATAAGTGA 1977 0.4795 MTQMVFLPRLKRGKRYSTGKMAAGDEDRGLWWFWSTRLRRSSSSSEESMCISMLLATTAIELGMSERSESRGVCRLCVEGDGVKDAGKGNLFPPHLSETKFPPSLVFCSRLLYAPNSLFSFQTLFPTLSLSKPHFLSLKPYFPPILPLFPLNSPQFRSAPRPMSTAAGPPDRRASPPRGTAGTTIRPALKRHLAFVTKPPFAPPDDYHSFSSIDSRRLADEAVVVRSPVSTSVSSARSQIHLRGSRIWNVLFCVECDYMKRKGGMNDSEGESHTQKWSNSPGYTNVSNITNSPFKTPVSAKGGRTQKAKASKEGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKEEVEKLSLEEQGLDDQIREMQERLRKLSENENNRKCLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAELPMIPLASSSESNEQVMTEMVPAECSGKEFEPQTQLSSHVYSDINASQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSTVDWNGVDMLNPDFGIISRPQTPSSGFVEVPTPGANSNHK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02638 658 SUPERFAMILY "Winged helix" DNA-binding domain 338 401 IPR036390 -
Vian3g02638 658 Pfam E2F transcription factor CC-MB domain 419 519 IPR032198 GO:0046983
Vian3g02638 658 MobiDBLite consensus disorder prediction 638 658 - -
Vian3g02638 658 Gene3D - 410 520 - -
Vian3g02638 658 MobiDBLite consensus disorder prediction 270 299 - -
Vian3g02638 658 Gene3D - 332 405 IPR036388 -
Vian3g02638 658 MobiDBLite consensus disorder prediction 265 333 - -
Vian3g02638 658 CDD E2F_DD 416 520 IPR032198 GO:0046983
Vian3g02638 658 MobiDBLite consensus disorder prediction 158 183 - -
Vian3g02638 658 MobiDBLite consensus disorder prediction 317 333 - -
Vian3g02638 658 SUPERFAMILY E2F-DP heterodimerization region 416 520 IPR037241 -
Vian3g02638 658 SMART E2F_TDP_2 338 403 IPR003316 GO:0005667|GO:0006355
Vian3g02638 658 Coils Coil 416 453 - -
Vian3g02638 658 PANTHER TRANSCRIPTION FACTOR E2F 272 620 IPR015633 GO:0000978|GO:0006357
Vian3g02638 658 Pfam E2F/DP family winged-helix DNA-binding domain 340 403 IPR003316 GO:0005667|GO:0006355
Vian3g02638 658 FunFam E2F transcription factor 1 332 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02638 Vian-Chr3 40989254 40998582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02638 183 648 E2F-DP Transcription Factor Family AT2G36010 53.926 3.57e-150 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vian3g02638 E2F_CC-MB 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02638 K06620 - gmx:100811762 822.772