Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02630 ATGGCCGAAACACAACCTCAACCGAACATCCCCGCAACCAACGACGTCGTATCGGCTCCTACAAAGGAGCACCTCGGAACAAGATGCGTCTATTGTCTCTGCAAAACCTTCTGGATTTTTCTGGTCCTCGTTATCATTCTCGTTATGCTTGTGATTTTGGTCTTATACATCATCATCACACCCCGCTCCTTCAGATTCCACGTCACCGAAGCCAAGCTCACGCAATTCGACTACGCCGCCAACACATCCACCCTCAACTACAACCTCGTACTCAACATCACAGCACGCAACCCGAACAAGAAGCTCAAGATCTACTACGACATCGTTCGGGCCAACGCGCTCTACGACGGCGTTAGGTTTTCCACCACCGACGTCAACATGCCCTGGAATTCCTACCTTCAGGACAAGAAGGGCACCAACCTTTTCAGCGCCGTTTTCTCGGGACAACATGTGATGGTGTTCGATCGAAACCAGGTTTCTGACTTCCATGAAGATACCAATGATGGGGTGTTCCCTATTGATATAAAAATCAAGTTTCGTATCAGGTTCAGGCTTGGGGATTATATTTCTGGGCACTTCAATGCCAGAGCCACGTGCGAGCTCAACGTTCCTTTCACTGATTCCAATGGGAAAACGGTGGCTGCGACTGCGTTTGACTCGACCAAGTGCCAAGTCGATTTCTGA 684 0.4956 MAETQPQPNIPATNDVVSAPTKEHLGTRCVYCLCKTFWIFLVLVIILVMLVILVLYIIITPRSFRFHVTEAKLTQFDYAANTSTLNYNLVLNITARNPNKKLKIYYDIVRANALYDGVRFSTTDVNMPWNSYLQDKKGTNLFSAVFSGQHVMVFDRNQVSDFHEDTNDGVFPIDIKIKFRIRFRLGDYISGHFNARATCELNVPFTDSNGKTVAATAFDSTKCQVDF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02630 227 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 20 211 - -
Vian3g02630 227 Pfam Late embryogenesis abundant protein 92 198 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02630 Vian-Chr3 40810071 40810754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02630 58 206 SNARE and Associated Proteins AT1G32270 28.859 1.31e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02630 - - ccaj:109813660 296.589