Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02621 ATGGCTCTGACATACTCTTTGCCGTTGCTCCTTTTCTCTCTGTGGACGGTGGTGTTAACCGCAACGGACCCGAACGACGTGGGGATTCTGAACAGTTTTCGAAGAGGTTTGAAGAACAAAGAGCTCTTACCGTGGCCGGAAGAAGGAGGAGACCCGTGTGGGAATCCGCCATGGAAGTACATCTTCTGCAATGGAAACAGAGTTTCTCAGATTCAGACCAAGGACTTGGGTCTGGTGGGCCCGCTACCCTCCAACTTCAACAAGCTTTCAATGTTGGAGAATCTGGGTCTGCAGAACAACAACCTCACCGGGCCCTTACCCTCCTTCAATGGCTTGTCAAACTTGAAGTACGCATTTCTCAACCGCAACGGGTTTGAATCCATTCCCGGAGATTTTTTCCGGGGGCTTCGGAGTCTGCAGGTGTTGGCTTTGGATTACAATAATCTCAATGCCTCTTCTGGTGGCTGGGTGCTTCCTCAAACTTTGGAAGATTCGGCGCAGTTGAGGAACTTCTCTTGCATGAGCTGCAACTTGGTGGGTCCTATTACTGCGTTTCTCGGCTCTTTGGCTTCGCTGGAGGTGCTGCAGCTCTCCGGGAACAGCTTGACCGGGAAGATTCCGGGGGAATTGAACACCGTTCCGGCGTTGCGGATTCTCTGGCTGAATAACCAGCGTGGCGATGGACTTACTGGGACAATTGAAGTTGTTGCGAGCATGATTTCGTTGACGAGTTTGTGGCTTCACGGGAATAAGTTTAGCGGGAGTATTCCGATGAACATTGGGGATTTGGTCTCGCTGAGGGATTTGGATCTTAATGGGAATGAGCTTGTTGGGTTGATTCCGCGTGGTTTGAGTGGGATGAAGTTGGAGCGGTTGGATTTGAATAATAACCACTTCATGGGTCCGATCCCTGATTTTGCAGCGGATAAAGTGAGTTTTGAAAGCAATGATTTTTGCTTGTCGAAGCCTGGGACTATGTGTGCGTTTGAGGTGATGGCGCTGTTGGATTTTCTTGGGGGGTTGGGTTACCCTCAGATTTTGGTTGATTCGTGGAGTGGCAATAATCCGTGTGATGGGCCATGGCTGGGGATAAAGTGCAATGGGGATGGAAAGGTGGAAATGATTATTTTGAATAACTTTAACCTTAGTGGTACTTTGAGTCCTTCTGTTGCCAAGTTGGATTCTCTTGTTGGAATAAGATTGGGAGGTAACGATATCAGTGGTAGGATACCCAGTAATTGGACTAGTTTGAGATCATTGACGTTGTTGGATCTGAGTGGTAATAACATTTCCCGTCCCTTGCCGAGTTTCGGGAAAGGGATGAAGCTTGTGATTGATGGGAATTCTCCGTTACGTGGTCCCCCAGAAGTTTCTCTTTCTCCAACTGGTTCTGTTTCTGGTTCTGGCAAGGTTGAACCTCCTTCATCTGATAAGCGTAATCCTAATCCATCTGAAGACTCTAGTCCCAATCCAAAGTCTGACAGTGTCTCTCTTGAGTCAAATAATTCCAGAAGGAAAGGATTGGTTACACTTGTGGCTCCTATTGCAGGTGTTGCAGCTGCGGCTTTTGTTCTCATTCCGCTTTCTGTGTATTGTTTCAGGAAGAGAAACGGTGTCTCTGAGAAAGCAGGGTCTCTGGTGATTCACTCCAGAGATCCTTCTGATTCGAACAATTTGCTGAAGGTTGTAATTGCTAATGACGGTAATGGAAGTGTTTCCACAGTGACTGGCACTGGGTCTGGGACTCTAAATGGAAGTGGGGAATCTCATGTCATTGAATCTGGGAACCTTGTGATATCGGTTCAGGTTCTTCGAAATGTGACCAAGAATTTTGCACGGGAGAATGAGCTTGGGCGCGGTGGATTTGGAGTAGTTTACAAGGGAGAATTGGATGATGGGACTAAGATTGCGGTGAAAAGAATGGAATCGGGTGTTATTACCAGCAAGGCCTTGGATGAGTTCCAGTCTGAGATTGCAGTTCTATCGAAAGTCAGGCACCGGCATTTGGTATCTCTTTTGGGTTATTCAGTTGAAGGTAATGAGAGGATTCTGGTTTATGAGTATATGCCACAAGGGGCTCTCAGTATGCATCTGTTCCATTGGAAGAGCTTGCAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGCCTGGCACATCAGATCTTCATTCACAGAGATCTTAAATCATCAAATATTTTGCTTGGGGATGACTTTAGAGCAAAAGTCTCGGATTTTGGATTGGTAAAACTTGCCCCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTTACCACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTTCTAATGGAGCTGTTAACTGGATTAATGGCACTTGATGAAGATAGACCTGAGGAAAGCCAGTACTTGGCATCGTGGTTCTGGCATGTAAAATCAGACAAGGAGAAACTAATGGCTGCTGTTGACCCTGCCCTTGACATAAAGGAAGAGATGTTCGATATTGTCTCCATCATTGCCGAGTTAGCTGGGCACTGCACTGCCAGGGAACCAAACCAAAGGCCAGATATGAGTCATGTTGTGAATGTTCTTGGACCGCTTGTTGAGAAATGGAAACCATTCGATGATGAGACTGAGGAGTATTCTGGCATCGACTATAGTCTTCCCCTTAACCAAATGGTAAAGGATTGGCAAGAGACAGAAGGGAAGGATTTGAGCTATGTGGACCTACAAGACAGTAAGAGCAGTATCCCTGCAAGACCTACTGGGTTTGCAGAGTCTTTCACATCTGTTGATGGCCGCTGA 2874 0.4669 MALTYSLPLLLFSLWTVVLTATDPNDVGILNSFRRGLKNKELLPWPEEGGDPCGNPPWKYIFCNGNRVSQIQTKDLGLVGPLPSNFNKLSMLENLGLQNNNLTGPLPSFNGLSNLKYAFLNRNGFESIPGDFFRGLRSLQVLALDYNNLNASSGGWVLPQTLEDSAQLRNFSCMSCNLVGPITAFLGSLASLEVLQLSGNSLTGKIPGELNTVPALRILWLNNQRGDGLTGTIEVVASMISLTSLWLHGNKFSGSIPMNIGDLVSLRDLDLNGNELVGLIPRGLSGMKLERLDLNNNHFMGPIPDFAADKVSFESNDFCLSKPGTMCAFEVMALLDFLGGLGYPQILVDSWSGNNPCDGPWLGIKCNGDGKVEMIILNNFNLSGTLSPSVAKLDSLVGIRLGGNDISGRIPSNWTSLRSLTLLDLSGNNISRPLPSFGKGMKLVIDGNSPLRGPPEVSLSPTGSVSGSGKVEPPSSDKRNPNPSEDSSPNPKSDSVSLESNNSRRKGLVTLVAPIAGVAAAAFVLIPLSVYCFRKRNGVSEKAGSLVIHSRDPSDSNNLLKVVIANDGNGSVSTVTGTGSGTLNGSGESHVIESGNLVISVQVLRNVTKNFARENELGRGGFGVVYKGELDDGTKIAVKRMESGVITSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEESQYLASWFWHVKSDKEKLMAAVDPALDIKEEMFDIVSIIAELAGHCTAREPNQRPDMSHVVNVLGPLVEKWKPFDDETEEYSGIDYSLPLNQMVKDWQETEGKDLSYVDLQDSKSSIPARPTGFAESFTSVDGR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02621 957 FunFam Receptor-like kinase TMK4 24 324 - -
Vian3g02621 957 Gene3D Ribonuclease Inhibitor 329 452 IPR032675 -
Vian3g02621 957 CDD STKc_IRAK 617 890 - -
Vian3g02621 957 ProSiteProfiles Protein kinase domain profile. 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02621 957 MobiDBLite consensus disorder prediction 450 501 - -
Vian3g02621 957 FunFam Leucine-rich repeat receptor-like kinase 329 453 - -
Vian3g02621 957 Gene3D Ribonuclease Inhibitor 24 325 IPR032675 -
Vian3g02621 957 FunFam receptor protein kinase TMK1 573 688 - -
Vian3g02621 957 SUPERFAMILY L domain-like 22 304 - -
Vian3g02621 957 MobiDBLite consensus disorder prediction 459 501 - -
Vian3g02621 957 Pfam Leucine rich repeat N-terminal domain 332 367 IPR013210 -
Vian3g02621 957 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vian3g02621 957 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Vian3g02621 957 Pfam Protein tyrosine and serine/threonine kinase 614 887 IPR001245 GO:0004672|GO:0006468
Vian3g02621 957 SUPERFAMILY Protein kinase-like (PK-like) 589 887 IPR011009 -
Vian3g02621 957 Gene3D Phosphorylase Kinase; domain 1 580 688 - -
Vian3g02621 957 FunFam receptor protein kinase TMK1 689 906 - -
Vian3g02621 957 SMART LRR_typ_2 112 135 IPR003591 -
Vian3g02621 957 SMART LRR_typ_2 136 165 IPR003591 -
Vian3g02621 957 SMART LRR_typ_2 417 440 IPR003591 -
Vian3g02621 957 SMART LRR_typ_2 263 286 IPR003591 -
Vian3g02621 957 SMART LRR_typ_2 189 213 IPR003591 -
Vian3g02621 957 MobiDBLite consensus disorder prediction 937 957 - -
Vian3g02621 957 SUPERFAMILY L domain-like 329 441 - -
Vian3g02621 957 Gene3D Transferase(Phosphotransferase) domain 1 689 908 - -
Vian3g02621 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Vian3g02621 957 PANTHER OSJNBA0070M12.3 PROTEIN 9 957 - -
Vian3g02621 957 SMART serkin_6 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02621 Vian-Chr3 40729070 40732313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02621 80 924 Receptor kinase-like Gene Family AT1G55610 29.890 8.31e-78 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vian3g02621 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02621 - - gmx:100781857 1544.64