Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02618 ATGGCGACATATTTTCAAAGTAACCCCAAAATTCAAGCAGGTGCTGACGGTCTTCAAACTCTCGTACTAATGAACCCTGACTATGTCCAATACTCCGACGCGCCGCCGCCACCCCACGGCGGAAACCACTTGTTTCTCAACTCCGCCGCCACCGTTGCCAACAACTCCTCCCTACTGAATCTCCCTCACGCGCCGTCCCCTCACACTCAGCAATTCGTCGGCGTGCCTCTCTCCGCAGCAGCGCAGGAGCCGCCGCCGTCCATGCCCCATGACGTCTCCGCCTTGCATGGCTTCCTGCCACGCATGCAGTACAACCTTTGGAACACAATTGACCCCAGCACGGCGGCGCGTGATGCCACACGCGCTTCCCAGGGACTGTCACTTAGCCTTCACGGTGAGGAGGTGCGTCCAAGGTCATCCTCCGCCCCTGGGGCCTCCAACGGCGGCGGTATGGCGGGGATTCAGAGTGTTCTCTTGAGTTCCAAGTTCTTGAGGGTCACGCAAGAACTTCTGGACGAGATTGTGAATGTTAACAGCGGAATTAAGGTTGAACAAGGGAAGCAAAGCTTCGAGAAAACTAAGGCGGTTGGAGAATCATCAACCGCTGCTAGTGGTGACGGCGGAGAGGCATGTGGGAAACGTAGCTCTGAACTGTCTACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGACGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACATCCTCCTTTGAGCAAGTTGCAGGGATTGGTTCTGCGAGGACGTACACAGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCTATAACAGGTCAAATCAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTGTTTTGGGGCTAAAGTTGAAGGTTCTAGGCTGAAATACGTGGACCATCATCTACGCCAACAGAGAGCTATTCAACAGTTGGGTATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTACGTGCTTGGCTCTTTGAACACTTTCTCCACCCCTACCCCAAGGACTCCGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTATTTGGAGGAGATGAAAGAACACGAACTAAATGGAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCCGCGATGAAACGAGAGAAACGTCCTACCTCTGAGATTGAATCAAAAGGTTCTAGTTCTAAACAAGATGTTTCTAATTCAATAGTTTCAACTTCACCATCAACATCAGCACCTGTAGTGGGTAATGTGAAGAATCAATCAGGATTCAGTTTCATGGGGTCATCAGAGTTAGATGGAATCACACAAGGAAGCCCCAAGAAGCCAAGGAACCCTGAAATCCTACTCTCTCCAAATCGTGCTTCTTCAATGAGCATGGATGTTAAAAGCAATGAGGCCAACAATGAGCAACAGCTTTCAATGGAGGAGAGACAGAGCAGGGATGGGTACTCTTTCATGGGGAGCCAAACAAACTTCACAGGTGGTTTTGGGCAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAAGAATTCACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACACATTGTCAGGAACACATCAAACCTTTCTCCCAAACCAGAACATTCAGCTAGGAAGAGGGTTGGACATTGGTCAACCGAATCAGTTTGGTGTGTTGAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGGTACTGGACTTTGTGGCATAA 1953 0.4849 MATYFQSNPKIQAGADGLQTLVLMNPDYVQYSDAPPPPHGGNHLFLNSAATVANNSSLLNLPHAPSPHTQQFVGVPLSAAAQEPPPSMPHDVSALHGFLPRMQYNLWNTIDPSTAARDATRASQGLSLSLHGEEVRPRSSSAPGASNGGGMAGIQSVLLSSKFLRVTQELLDEIVNVNSGIKVEQGKQSFEKTKAVGESSTAASGDGGEACGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTSSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGAKVEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGNGSEEKSSKSGEDPAMKREKRPTSEIESKGSSSKQDVSNSIVSTSPSTSAPVVGNVKNQSGFSFMGSSELDGITQGSPKKPRNPEILLSPNRASSMSMDVKSNEANNEQQLSMEERQSRDGYSFMGSQTNFTGGFGQYPMEEIGRFDAEEFTPRFSGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGQPNQFGVLNNSTSHSSAAFESINMQNPKRFAAQLVLDFVA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02618 650 MobiDBLite consensus disorder prediction 188 223 - -
Vian3g02618 650 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Vian3g02618 650 MobiDBLite consensus disorder prediction 118 149 - -
Vian3g02618 650 CDD homeodomain 339 400 IPR001356 GO:0003677
Vian3g02618 650 MobiDBLite consensus disorder prediction 482 515 - -
Vian3g02618 650 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
Vian3g02618 650 MobiDBLite consensus disorder prediction 444 470 - -
Vian3g02618 650 SUPERFAMILY Homeodomain-like 340 406 IPR009057 -
Vian3g02618 650 Gene3D - 335 412 - -
Vian3g02618 650 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 425 - -
Vian3g02618 650 MobiDBLite consensus disorder prediction 411 443 - -
Vian3g02618 650 Pfam Associated with HOX 157 290 IPR006563 -
Vian3g02618 650 Coils Coil 223 250 - -
Vian3g02618 650 FunFam BEL1-like homeodomain protein 9 342 404 - -
Vian3g02618 650 SMART prehox3 152 291 IPR006563 -
Vian3g02618 650 MobiDBLite consensus disorder prediction 411 470 - -
Vian3g02618 650 SMART HOX_1 339 403 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02618 Vian-Chr3 40685604 40687949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02618 1 650 Homeobox Transcription Factor Family AT2G35940 48.361 6.79e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian3g02618 POX 2.2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02618 - - gmx:100810851 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02618 3 40685604 40687949 Vian3g02618 3 40685604 40687949 ECH
Vian2g02560 2 46282052 46284901 Vian3g02618 3 40685604 40687949 PCT