Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02617 ATGGAGGAAATCGAAGTGCCTCAATACTTCATCTGCCCCATATCCCTCCAAATCATGAACGACCCCGTTACGGCCATAACGGGCATAACTTACGACCGAGAAAGCATTGAACAATGGCTATTCAATAACAAGAATACCACCTGCCCCGTTTCCAAACAACTCCTCCCAAGAGATTCTGATCTAACCCCTAACCACACCCTTCGACGCTTGATCCAAGCCTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGCATTCCCACTCCTAAGCCTCCTCTCAACACCCTTCAAGTCCTTAAACTCCTCAAACATCTCCATCATCACAAAACCTTCGTTCAGTTGGAACTCCTTGCCGTCGAGAACCACAGAAACAACAAGTGCTTGCTAGAAGCAGAGGTCCCTAGGGCCATGATCCTCTTCATCATCAATTGCTATAGAAAAAATCAAATCCAAAAGGGTCTCCAAGAAGCTCTTAGCATATTGCAGTTTGTCAAGATCCCCAAGAAGGAATGGCCGCTGCTCGTTAAGGACCACGACCAGATAATGGATTCTCTAGCATGGATTCTGTGTCGTGAGGGAATGGAGAACTCCGTTGCAGTGAAATCCCATGCGCTTCTACTTCTGAAGAAGATCATCAACAAGGGCGACACGTGTCACGTTCTGGAGAGGCTGAAACCCGAATTCTTCGAAACAATGGTGAAGATTCTGAGACACGGAGTGACCCAACAAGGAACGAGTGCGGCACTTCACGTTCTGCTGAGCGCTTCTTCTTCGACGCGGAACAGGATCGTGATGGTGGAAGCAGGTGTGGTACACGAAGTGGTGGAGATCGAAATGGGGGCGCCGGAGAAGAGAGTGACGGAACTGACGCTGGCTATATTGTTCCACTTGTGTTGTTGCGCCAACGGGAGAGCCAAGTTTTTGAGCCACGAAGGGGCCATCGCGGTGGTGACGGAGAGGATTCTGAAGGTGTCTGCGGCGGTGGACGATAGGGCGGTGTTTGTTTTGGCAATGGTGGCTAAGTTTTCGGGGACGAAGGTGGTTTTGCAGGAGATGTTGAAGGCGGGAAGCATGGCGAAGCTTTGCATGGTGCTTCAGGCTGATAGGGCAAAGTATTTGAAGGACAAAGCCATGGAAATTCTGAAGGAACACTCGGAGCTTTGGAGCGACTCGCCTTGCTTTCCTCGTTCGTCGTTTTGTGCCTACGTTCCCTACTGA 1218 0.5025 MEEIEVPQYFICPISLQIMNDPVTAITGITYDRESIEQWLFNNKNTTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNTLQVLKLLKHLHHHKTFVQLELLAVENHRNNKCLLEAEVPRAMILFIINCYRKNQIQKGLQEALSILQFVKIPKKEWPLLVKDHDQIMDSLAWILCREGMENSVAVKSHALLLLKKIINKGDTCHVLERLKPEFFETMVKILRHGVTQQGTSAALHVLLSASSSTRNRIVMVEAGVVHEVVEIEMGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKAGSMAKLCMVLQADRAKYLKDKAMEILKEHSELWSDSPCFPRSSFCAYVPY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02617 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Vian3g02617 405 PANTHER WDSAM1 PROTEIN 2 395 IPR045185 GO:0061630
Vian3g02617 405 Gene3D - 94 387 IPR011989 -
Vian3g02617 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vian3g02617 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vian3g02617 405 SUPERFAMILY RING/U-box 3 79 - -
Vian3g02617 405 SUPERFAMILY ARM repeat 174 379 IPR016024 -
Vian3g02617 405 CDD RING-Ubox_PUB 7 58 IPR045210 -
Vian3g02617 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02617 Vian-Chr3 40673373 40674888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02617 2 394 U-box Gene Family AT3G11840 41.043 7.00e-113 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02617 - - gmx:100798446 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02617 3 40673373 40674888 Vian3g02617 3 40673373 40674888 ECH
Vian2g02562 2 46309794 46311059 Vian3g02617 3 40673373 40674888 PCT