Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02611 ATGAACGACTTGTTCTCCGGCTCCTTCACCCGCAACAGCGACCAAGCCTCGCCGGACCACCACCACCACGTGGTCGAGATGGCGGCGGTGGAGGGCGGCGTGAACCTGGAGAAGTTCTTTGAGGAAGTTGAGCCGGTAAAAGCAGAGTTGAAAGAGCTAGAGCGTCTCCATGAGAACTTACGTGGTTCCCACGAAAAAAGCAAGACCCTTCACAGTGCTAATGCTGTGAAAGAGCTTCGCTCACGCATGGACGCTGATGTAGCACTGGCTTTAAAGAAAGCCAAGCTCATCAAGGTCCGGCTCGAAGCTCTGGACCGGTCCAATCAGACAAGCCGAAACCTGCCTGGTTCTGGACCGGGTTCTTCCTCCGACAGGACCAGGACATCTGTGGTGAGCGGATTGAGGAAGAATCTGAAGGACTCCATGGACAACTTCAATAGCCTTAGGCAACAGATATCGACGGAGTACAGGGAAACCGTGCAGCGGAGATATTATACTGTTACCGGAGAGAACCCTGATGACAAAACCATCGACCTTCTCATTTCTACCGGTGAGAGTGAAACATTTTTGCAGAAAGCGATTCAGCAGCAAGGTAGAGCGAGTGTGATGGATACGATCCAAGAGATTCAAGAGAGGCACGATACAGTGAAAGAGATAGAGCGAAACCTGAAGGAGCTGCACCAGGTCTTCCTAGACATGGCTGTGTTGGTGCAGTCCCAGGGAGAGCAATTGGACGACATCGAGAGCCATGTAGCACGTGCCAACTCGTACGTGCGAGGTGGGGTCCAGCAGCTCCAAGTAGCAAGGAAGCACCAGAAAAACACGCGAAAGTGGACCTGCTATGCCATCATTTTGCTCATCATTATCACTTTGATCATAGTTCTCCCCATAGTTCTAAGAAATTAA 906 0.5132 MNDLFSGSFTRNSDQASPDHHHHVVEMAAVEGGVNLEKFFEEVEPVKAELKELERLHENLRGSHEKSKTLHSANAVKELRSRMDADVALALKKAKLIKVRLEALDRSNQTSRNLPGSGPGSSSDRTRTSVVSGLRKNLKDSMDNFNSLRQQISTEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLKELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLQVARKHQKNTRKWTCYAIILLIIITLIIVLPIVLRN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02611 301 FunFam Syntaxin 132 199 299 - -
Vian3g02611 301 MobiDBLite consensus disorder prediction 1 20 - -
Vian3g02611 301 CDD SynN 36 193 IPR006011 GO:0016020
Vian3g02611 301 Coils Coil 36 56 - -
Vian3g02611 301 CDD SNARE_syntaxin1-like 205 266 - -
Vian3g02611 301 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian3g02611 301 Gene3D - 34 166 - -
Vian3g02611 301 SMART SynN_4 31 157 IPR006011 GO:0016020
Vian3g02611 301 Coils Coil 131 151 - -
Vian3g02611 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Vian3g02611 301 MobiDBLite consensus disorder prediction 108 130 - -
Vian3g02611 301 Pfam SNARE domain 242 294 IPR000727 -
Vian3g02611 301 SMART tSNARE_6 201 268 IPR000727 -
Vian3g02611 301 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Vian3g02611 301 PANTHER SYNTAXIN 52 289 IPR045242 -
Vian3g02611 301 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Vian3g02611 301 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020|GO:0016192
Vian3g02611 301 Gene3D - 195 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02611 Vian-Chr3 40559190 40560427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02611 28 280 SNARE and Associated Proteins AT3G11820 74.308 3.13e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02611 K08486 - gmx:100808718 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02611 3 40559190 40560427 Vian3g02611 3 40559190 40560427 ECH
Vian2g02567 2 46367020 46368667 Vian3g02611 3 40559190 40560427 PCT