Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02610 ATGGCTGCTTCTTCCCTTATCTTCAACAGTTCACTATCCTTTAACTTCTCCCACACTGTCATATCCTTCAAACCTCAAAACTTCGAGCCACAATTTTCCATTTCTTCTGCGATCTCACTTTGCCATCTTCCCCTGTCTTTGGTTTCCTTCCAAGACACTCAAAACCCCATACAGGATGAAACCCTGCAAAAAACAGAGCCAAATGCCTCACTCTTCAACCATTCAGCGAGACTCTTTGTGGGAAACTTGCCTTATTCGTTGCCCTCTTCTCAGTTGGCTCAGCGGTTTGGAGAGGCTGGCAATGTTGTATCTGTTGAGATTGTGTATGATGACATTACGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTGGAGGAAGCTGAATGTGCAATTCGAATGTTTGATGGCTCTAATTCATGTGATGGTAATGGCTGTGATGATGAACAGGAAATTGGAGGTAGGATTATTAAGGTAAACGTCGCAGAAATACCCAGAAAAGGAAAATGGAGAGTAATGGGTTCAAACTATAGAGGCTTTGTAGACAGCCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTGTGACTTCACAGTGTCTTAGAGATGCCTTTGTTGAGCTGCCAGGCTTCCTGAGTGCCAAAGTCATCTACGAAAGGAACAGTGGGAAGTCTCAGGGATATGGGTTTGTCTCTTTTCGAACTGCTGAGCATGTAGAGGCTGCTTTGAATTCTATGAATGGAGTGGGTCAGCATCTGAGATGTTCCTTCTTTCAAGCTTCCTCTGTTGACAAGGACAAAAACCACTTGGACGACAATCATCCCTACCGCCAGAAACAAGCCTATCTTGAGCATCCTTGTTCATGCTTACAAATATACAGGACATTCAAGGCAGCCTTGCACTCAGAAATGGCCAAGCTTTCTTGGTTGGCTTTTGGTGCAGAAGATGTGGAAGCTTTCGGTAAGGAAAGGATCAAAGATCTTGGTTGGATCTTGATGGTTGTAGGTGTTCTTTATGGGGTTATATTTGGTTGGTTGTAG 1047 0.4422 MAASSLIFNSSLSFNFSHTVISFKPQNFEPQFSISSAISLCHLPLSLVSFQDTQNPIQDETLQKTEPNASLFNHSARLFVGNLPYSLPSSQLAQRFGEAGNVVSVEIVYDDITDRSRGFAFVTMGSVEEAECAIRMFDGSNSCDGNGCDDEQEIGGRIIKVNVAEIPRKGKWRVMGSNYRGFVDSPHKIYAGNLGWGVTSQCLRDAFVELPGFLSAKVIYERNSGKSQGYGFVSFRTAEHVEAALNSMNGVGQHLRCSFFQASSVDKDKNHLDDNHPYRQKQAYLEHPCSCLQIYRTFKAALHSEMAKLSWLAFGAEDVEAFGKERIKDLGWILMVVGVLYGVIFGWL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02610 348 Gene3D - 184 271 IPR012677 -
Vian3g02610 348 Gene3D - 49 183 IPR012677 -
Vian3g02610 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 166 IPR000504 GO:0003723
Vian3g02610 348 PANTHER OS02G0815200 PROTEIN 60 259 - -
Vian3g02610 348 SUPERFAMILY RNA-binding domain, RBD 75 250 IPR035979 GO:0003676
Vian3g02610 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 262 IPR000504 GO:0003723
Vian3g02610 348 SMART rrm1_1 188 258 IPR000504 GO:0003723
Vian3g02610 348 SMART rrm1_1 77 162 IPR000504 GO:0003723
Vian3g02610 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 250 IPR000504 GO:0003723
Vian3g02610 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02610 Vian-Chr3 40553629 40556812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02610 68 251 Eukaryotic Initiation Factors Gene Family AT4G34110 28.877 1.84e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02610 - - vra:106769956 437.958