Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02608 ATGGGCTTTCGTTTACCCGGTATCAGAAGGACTTCATCTGGCAGAAATCAAGCATCTTCAAAAGTGTTGGATGCGCCAAAGGGATACCTTGCAGTCTATGTGGGAGAGAATATGAAACGATTTGTGATTCCTGTATCACACCTGAACCAACCTTTATTCCAAGACTTGTTGAGTCAAGCTGAGGAAGAATTTGGATATGATCATCCCATGGGTGGCCTCACAATTCCTTGCAGCGAATATGTCTTCCAACATATTACTTCTTGTTTGAATGGACAGGTTAATACAACAATGGGCTTTCGTTTACCCGGTATCAGAAGGACTTCATCTGGGAGAAATCAATCATCTTCAAAAGTGTTGGATGCGCCAAAGGGATACCTTGCAGTCTATGTCGGAGAGAATATGAAACGGTTTGTGATTCCTGTATCACACCTGAACCAACCGCTATTCCAAGACTTGTTGAGTCAAGCTGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCACAATTCCTTGCAGCGAACATGTCTTCCAACATATTACTTCTTGTTTGAATGGACAATAA 567 0.4268 MGFRLPGIRRTSSGRNQASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEYVFQHITSCLNGQVNTTMGFRLPGIRRTSSGRNQSSSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEHVFQHITSCLNGQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02608 188 Pfam Auxin responsive protein 12 89 IPR003676 GO:0009733
Vian3g02608 188 Pfam Auxin responsive protein 106 185 IPR003676 GO:0009733
Vian3g02608 188 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 114 185 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02608 Vian-Chr3 40512780 40516879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02608 24 91 Calmodulin-binding Proteins AT3G43120 51.471 5.92e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02608 - K14488 aip:110269930 253.832