Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02607 ATGGCATCTGATGATGCACCAACCTTCGTGAATGCTAAGCAGTACCATGGAATCATCAGACGAAGGCAGTCACGTGCCAAGGCTGTTCTTGAGAATAAACTCATCAAACGTCGCAAGCCTTACATGCATGAGTCACGCCATCTACATGCAATGAGGCGACCAAGAGGAAACGGTGGTCGTTTCTTGAACACAAGAAACTCCAATAATGGAAATGGTGGAAATGATTCTGAAGTGAATAACATGGGTGGCCTACAATTTCTGTCCAGCGCCTCTCAGAGTTCTGAAATGCTGCAATCTGATGTGGGAATAAATTCACCAATGGAGACAGATGAATGCAGTCCAAACATGTCTAGTACAGAAGTGAATAGCATGTTTTCGAGGGAAGGTTTCGATGGCTTTTCTGTGAATCCTCTTGGATCTTCGGTTCTTCCTCTAGGATCTCCTGTGTATCCTCTTGGATCTTCTGTCCATTCGTTAACTAACTTGGAGAACAAGTGGGTTTGGTGTGATGTTGCACCGAACACGTCCCTTGAAAAAGACCAGATGAAGAAATTCTCTTGCACTTTTCTAGTGTTTATTGTGACAAATTTAGTTCTGGAAAACTTCGTTCTATCTGATTTAGGGAAACCATTCTTGGCTAAGCTTAGGCCATTCATCCCTGGCTCACCACATTCTGCAAAGGCCTTCCATGACATGGATGTATTATACATGGTAATGGCCATGCAGTCTACGTGA 735 0.4367 MASDDAPTFVNAKQYHGIIRRRQSRAKAVLENKLIKRRKPYMHESRHLHAMRRPRGNGGRFLNTRNSNNGNGGNDSEVNNMGGLQFLSSASQSSEMLQSDVGINSPMETDECSPNMSSTEVNSMFSREGFDGFSVNPLGSSVLPLGSPVYPLGSSVHSLTNLENKWVWCDVAPNTSLEKDQMKKFSCTFLVFIVTNLVLENFVLSDLGKPFLAKLRPFIPGSPHSAKAFHDMDVLYMVMAMQST 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02607 244 MobiDBLite consensus disorder prediction 60 82 - -
Vian3g02607 244 Gene3D - 5 65 - -
Vian3g02607 244 PRINTS CCAAT-binding transcription factor subunit B signature 7 29 IPR001289 GO:0003700|GO:0006355
Vian3g02607 244 PRINTS CCAAT-binding transcription factor subunit B signature 38 61 IPR001289 GO:0003700|GO:0006355
Vian3g02607 244 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 123 IPR001289 GO:0003700|GO:0006355
Vian3g02607 244 ProSiteProfiles NF-YA/HAP2 family profile. 4 64 IPR001289 GO:0003700|GO:0006355
Vian3g02607 244 MobiDBLite consensus disorder prediction 52 82 - -
Vian3g02607 244 SMART cbf3 3 64 IPR001289 GO:0003700|GO:0006355
Vian3g02607 244 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 7 61 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02607 Vian-Chr3 40503749 40504676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02607 4 145 CCAAT-HAP2 Transcription Factor Family AT5G06510 47.552 1.32e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian3g02607 CBFB_NFYA 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02607 K08064 - gmx:100808195 199.904