Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02604 ATGGATACGAACATCCGTGAATGTATATGGACATCGAATGTCCTATATCCGTTGTGCGATATGCTAATGCGAGATGCACCCCTAGGTATTGTATCACAGAGCCCTAACATAATGGATCTTGTTAAGTGCGATGATGCAACACTGTTGTATAAAAACAAGGTATGGAGATTAGGGGTAACACCAAGTGAATCCCAAATAAGAGAGATAACTTTGTGGCTCTCTGAATGTCACAAGGATCCCATAGGTTTAAGTACATATAGCTTGTCTAATACAGGCTTCCCAGGGGCTACTACTCTTGGTGATACAACTTGTGGAATGGCAGTTGTCAGAATATCTTCCAAAGATATAGTTTTCTGGTTCCGATCTCACACAACCACAGAAATTCGATGGGGTGGTGCAAAGCATGAACCTGGTGAAAGGGATGATGGTAGCAGGATGCATCCAATATCTTCATTTAAGGCTTTCCTTGAAGTTGTGAAGACAAGAAGTTTGCCCTGGAAGGATTATGAAATGGACATCATTCATTCATTGCAACTAATACTGAGAAATGCATTCAAAGACAACGAGAGTATGGAGATAAGCACATATGCTATCAATACAAGATTAAGTGATTTGAAAATCGAAGGGATGCAAGAACGGGAAGTAGTGACTAGTGAGATGGTAAGGTTTATTGAAACAGCAACAGTACCAAACAGATGTCCCAAAAGAAGGAAGGAATTCGAAACAGAAATGGAGAATGGTAGGAGGAAGAAACAGACACGGAGACAAACAGAGAACGTGAGAGTAGGGGGTGGGACTGCGAGTGAAAATGAGAAGGAGGTGTAG 825 0.4145 MDTNIRECIWTSNVLYPLCDMLMRDAPLGIVSQSPNIMDLVKCDDATLLYKNKVWRLGVTPSESQIREITLWLSECHKDPIGLSTYSLSNTGFPGATTLGDTTCGMAVVRISSKDIVFWFRSHTTTEIRWGGAKHEPGERDDGSRMHPISSFKAFLEVVKTRSLPWKDYEMDIIHSLQLILRNAFKDNESMEISTYAINTRLSDLKIEGMQEREVVTSEMVRFIETATVPNRCPKRRKEFETEMENGRRKKQTRRQTENVRVGGGTASENEKEV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02604 274 PANTHER OS08G0260000 PROTEIN 82 230 - -
Vian3g02604 274 MobiDBLite consensus disorder prediction 235 274 - -
Vian3g02604 274 FunFam Phytochrome 10 136 - -
Vian3g02604 274 Gene3D - 125 161 IPR029016 -
Vian3g02604 274 MobiDBLite consensus disorder prediction 235 257 - -
Vian3g02604 274 PRINTS Phytochrome signature 148 166 IPR001294 GO:0006355|GO:0009584
Vian3g02604 274 PRINTS Phytochrome signature 219 235 IPR001294 GO:0006355|GO:0009584
Vian3g02604 274 PRINTS Phytochrome signature 115 134 IPR001294 GO:0006355|GO:0009584
Vian3g02604 274 PRINTS Phytochrome signature 30 50 IPR001294 GO:0006355|GO:0009584
Vian3g02604 274 SUPERFAMILY GAF domain-like 15 186 - -
Vian3g02604 274 Gene3D - 16 178 IPR043150 -
Vian3g02604 274 Pfam Phytochrome region 18 188 IPR013515 GO:0006355|GO:0009584
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02604 Vian-Chr3 40483097 40483921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02604 18 230 Histidine Kinase Gene Family AT1G09570 73.709 2.95e-104 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02604 K12120 - var:108324398 559.681