Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02602 ATGGATTCCAAGAACATGGCAAAGAAGACCATGAAGAAGACCAAGGGTCGTCAGAAGATTGAGATAAAAAAGATGAGCAACGAGCATAACCTTCGGGTCACCTTCTCCAAGCGTCGAACTGGGATTTTCAAGAAAGCCAGCGAACTTGCTACCCTCTGTGGTGTGGACATTGCTGTCATCATGTTTTCACCCAGTAACCAGGTTTTCTCCTTCGGAAGCCCTAATGTTGATCCTGTTATCCAACGCTACACGGCGCAAGGTCCACCTCCGCTCCTCACGCTGGACCTGAACGAGGCTCACAGCACCGTGGACGAGGGAGAACTCCATGCGCAACTCAACAACTTGTCCGACCAGATGGCGGCGGAGAAGAAGCACGAAGAGGCTCTGAAACGTCTGATGAAGGATGTGGAGGAACACTCGTGGTGGGCCATGCCGATGGATAGCATGAACGATGCTCAGCTGGAGAAGTACAAGAAGATGTTGGAGGATCTGAAGGAATGTGTGAATGAAAAACGTGAGAAGCTCCTCCTTCAGACCACTTTTGCTTACAACTCACCCACTCAGTTTCTCACAGGTGGAAACAACTCCTTTTCCAGTGTTGATAACTCTGAAACTATACATCCGCCATTGTCGTTGTAG 639 0.4945 MDSKNMAKKTMKKTKGRQKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSFGSPNVDPVIQRYTAQGPPPLLTLDLNEAHSTVDEGELHAQLNNLSDQMAAEKKHEEALKRLMKDVEEHSWWAMPMDSMNDAQLEKYKKMLEDLKECVNEKREKLLLQTTFAYNSPTQFLTGGNNSFSSVDNSETIHPPLSL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02602 212 Gene3D - 27 89 IPR036879 GO:0003677|GO:0046983
Vian3g02602 212 MobiDBLite consensus disorder prediction 192 212 - -
Vian3g02602 212 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Vian3g02602 212 SUPERFAMILY SRF-like 16 92 IPR036879 GO:0003677|GO:0046983
Vian3g02602 212 FunFam Agamous-like MADS-box protein AGL62 27 91 - -
Vian3g02602 212 PANTHER MADS BOX PROTEIN 17 170 - -
Vian3g02602 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Vian3g02602 212 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Vian3g02602 212 Coils Coil 112 132 - -
Vian3g02602 212 CDD MADS_MEF2_like 16 83 IPR033896 GO:0000977|GO:0045944
Vian3g02602 212 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Vian3g02602 212 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Vian3g02602 212 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Vian3g02602 212 Coils Coil 154 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02602 Vian-Chr3 40459134 40459772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02602 11 212 Type I MADS-box Gene Family AT5G60440 40.580 1.32e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian3g02602 SRF-TF 6.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02602 - - ccaj:109815930 242.662