Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02592 ATGGAGGTTCCGGAAATGGGAGGCAAGACTGAAACCCATTTGACATCAGCAGCAGCCTTTGTGGAAGGGGGGATTCAAGAAGCATGTGATGATTCTTGTAGCATATGCCTTGAGAATTTTAGCAAAAGTGATCCTGCAACTGTCACTAATTGCAAGCATGACTTCCATCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCTCAATGCCCTATGTGTTGGCAAGCTATCAGCTTGAAGGATGCTACCAGTCAAGAACTGCTCGAGGCAGTAGAGCAGGAGAGGAGCTTGAGGGATATCCCATCCAGAAATGCTTCAATTTTTCATCTTTCGCAGCTTGAATTTCAGCAGTTACCAATGCGTGAGTCTGATATTGAAGAGCGAATCCTTCGACATTTAGCTGCTGCAGCATCAATGAGGAGAGCACACCATGTTGGTCGGAGGGAAAGTCAACGAACTAGGTCATCTGGTCATGGCAATGCACACTCCTTAGTGTACTCAACTCAGCCTAGAGCACCTCCATCAGCTACTGGAGCGGGAAGTGAACCAGCTGCAATTCCTGCAGGAAATCCATCTTCTCCTCTTATATTTGATGGAACACAACAATCATCACCACAGCAGATGCCCCTATTACAAACTCGGAGTTCTTCTTTTACTTCTGGCTCTACAGTCGCAACAACAAATCTTCAAGGAGTTCACTCTAATGATGGAAGCTTTGCCTCTCATTCCTTGCCTGCAAGCCATGATGAACCAGAGCCATCAGAACAATCATTCTCAGATTCTCTCCTTTCCAAATTTAATGCAGTATCCATGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTGTGTCAGAACTTGGTTCTGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATTGAGCGCCTCGAAACAGCAAGAGAAAATAAGAGCGCTGCAGGCACTTCTGTATCAAATCGTTCCATCGCAGAGACCAGCAACAACCAAAACAATGTGGAAGTTCACGGAGAGAACTCTTTTCCTGGCAGTAATACTTCTGCTACTTTTTCTGTTTCCCCAGATTCAAAGTGA 1122 0.4501 MEVPEMGGKTETHLTSAAAFVEGGIQEACDDSCSICLENFSKSDPATVTNCKHDFHLQCILEWCQRSSQCPMCWQAISLKDATSQELLEAVEQERSLRDIPSRNASIFHLSQLEFQQLPMRESDIEERILRHLAAAASMRRAHHVGRRESQRTRSSGHGNAHSLVYSTQPRAPPSATGAGSEPAAIPAGNPSSPLIFDGTQQSSPQQMPLLQTRSSSFTSGSTVATTNLQGVHSNDGSFASHSLPASHDEPEPSEQSFSDSLLSKFNAVSMRYKESISKGTRGWKERLFSPNSSVSELGSEVRRELNAKIASVSRLIERLETARENKSAAGTSVSNRSIAETSNNQNNVEVHGENSFPGSNTSATFSVSPDSK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02592 373 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 22 81 - -
Vian3g02592 373 MobiDBLite consensus disorder prediction 194 208 - -
Vian3g02592 373 MobiDBLite consensus disorder prediction 228 260 - -
Vian3g02592 373 SMART ring_2 33 73 IPR001841 -
Vian3g02592 373 Coils Coil 303 323 - -
Vian3g02592 373 MobiDBLite consensus disorder prediction 326 373 - -
Vian3g02592 373 Pfam Ring finger domain 31 73 IPR001841 -
Vian3g02592 373 MobiDBLite consensus disorder prediction 156 175 - -
Vian3g02592 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 83 IPR013083 -
Vian3g02592 373 MobiDBLite consensus disorder prediction 228 242 - -
Vian3g02592 373 MobiDBLite consensus disorder prediction 137 208 - -
Vian3g02592 373 FunFam E3 ubiquitin-protein ligase RHF2A 5 107 - -
Vian3g02592 373 MobiDBLite consensus disorder prediction 322 373 - -
Vian3g02592 373 SUPERFAMILY RING/U-box 26 80 - -
Vian3g02592 373 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02592 Vian-Chr3 40331060 40334925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02592 30 81 C3H Transcription Factor Family AT4G00335 42.308 3.59e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02592 K19043 - gmx:100803582 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02592 3 40331060 40334925 Vian3g02592 3 40331060 40334925 ECH
Vian2g02969 2 50348617 50351373 Vian3g02592 3 40331060 40334925 PCT