Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02589 ATGGGTTTCCGTTTACCTGCCATCCGACGGGCATCATCATTCACAGCAAGACAAGCATCTTCAAAATCTGAAGACATACCGAAAGGCTATTTTGCAGTTTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTGAGTCATGCAGAGGAAGAGTTTGGATATGATCATCCCATGGGAGGCCTCACAATTCCATGCAGTGAAGATGTCTTTCAACATACAATTTCTTGCTTCAAGGGACAACGAGCTCAAAAAATGGGTTTCCGTTTACCTGCCATCCGACGGGCATCATCATTCAGTGCAAGACAAGCACCTTCAAAATCTGAAGACATACCAAAGGGCTATTTTGCCGTGTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCCTTCCAAGATTTACTGAGTCAAGCTGAAGAAGAGTTTGGATATGATCATCCCATGGGAGGCCTCACAATTCCATGCAATGAAGATGTCTTCAACCATACAATTTCTTGTTTCAAGGGACAATAA 573 0.4223 MGFRLPAIRRASSFTARQASSKSEDIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSHAEEEFGYDHPMGGLTIPCSEDVFQHTISCFKGQRAQKMGFRLPAIRRASSFSARQAPSKSEDIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCNEDVFNHTISCFKGQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02589 190 Pfam Auxin responsive protein 12 89 IPR003676 GO:0009733
Vian3g02589 190 Pfam Auxin responsive protein 107 186 IPR003676 GO:0009733
Vian3g02589 190 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 116 185 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02589 Vian-Chr3 40282678 40285721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02589 15 93 Calmodulin-binding Proteins AT3G43120 44.304 1.03e-18 77.4