Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02568 ATGGCGGACGTCGTCACCGAAGCTGGCGTCGTTGCGGATCCCACCCAACTAGATGTCAAACTGTTCAACCGCTGGAGCTTCGAAGACATTCAGGTTAACGATATTTCGCTGGCTGATTATATCGGAGTGGTGTCGTCCAAGCATGCCACTTATGTTCCTCACACATCCGGTAGGTACTCGGTGAAGCGGTTCAGGAAAGCGCAGTGCCCCATTGTGGAGAGGCTTACTAACTCTCTTATGATGCACGGAAGAAACAACGGAAAGAAGCTCTTGGCTGTTAGGATTATCAAGCATGCCATGGAAATCATTCACTTGCTCACTGACCAGAATCCAATTCAAGTCATTGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCTACTAGAATTGGATCTGCTGGAGTGGTGAGGAGACAAGCCGTTGATATCTCACCCCTTCGACGTGTTAATCAGGCCATCTATCTTCTAACAACAGGTGCACGGGAAGCTGCTTTTAGAAACATCAAGACAATTGCTGAATGTTTGGCTGATGAACTTATTAATGCCGCAAAAGGTTCATCCAACAGTTACGCCATCAAGAAAAAAGATGAAATTGAAAGAGTTGCCAAGGCTAATCGTTAA 624 0.4647 MADVVTEAGVVADPTQLDVKLFNRWSFEDIQVNDISLADYIGVVSSKHATYVPHTSGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLLAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02568 207 CDD uS7_Eukaryote 20 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vian3g02568 207 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vian3g02568 207 NCBIfam 30S ribosomal protein S7 19 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vian3g02568 207 Gene3D Ribosomal protein S7 domain 2 207 IPR036823 -
Vian3g02568 207 Pfam Ribosomal protein S7p/S5e 62 207 IPR023798 -
Vian3g02568 207 SUPERFAMILY Ribosomal protein S7 20 207 IPR036823 -
Vian3g02568 207 PANTHER RIBOSOMAL PROTEIN S7 17 207 IPR000235 GO:0006412
Vian3g02568 207 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 3 207 IPR000235 GO:0006412
Vian3g02568 207 FunFam 40S ribosomal protein S5 4 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02568 Vian-Chr3 39950406 39952733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02568 18 207 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 90.526 1.84e-131 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02568 K02989 - gmx:100305898 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02568 3 39950406 39952733 Vian3g02568 3 39950406 39952733 ECH