Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02561 ATGGAGTTGCCTTCAAATAACTTGGATCTTGGGCCTAGGCAGATTGAACAAGAGAAAGACGAAGGTCCCTTGTTGCATTGTGATTTTTGTGACATTGAAGTAGTTCACAAGCTGGCTCAAATGTTCATGCCAGCACTAGGCTGTGCCTGCGTTGATAACACAACAGGAGATCCCTTCAATACCCCTGGTTTTGTGGCTGTTGATTTGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGTGAATTATTTGTTGCTGAGTCTATTATCTCTGAGGAGGTTCCTGACGGTGAAGCTTTGGAACACCCTTTTGATATCATTTGTTTTTTTGTTGACGAATTTGTTAATTCAAAGAGAAATTTGTTGAGCCAGTTTTCAGGGTGGTTGCTAAGTGATAAGAGAGAGGACAAAATAGATGATTTTGTTCAGGAGATGGAAAAAAATGGTTTTTGGCCACTGGATAGAAGAGAAACACTTGCCAAAGATTTGCTCAAGAACGTTGACTTCAAAAGCTCATTTCATTGTGGTATGAGTTTTAAATCTGCAGAAGATCTTGCCAACCATGTTGATGCTTGCAACTTCAGGTCTGTGGTATGCCAAAATGACGGGTGCAATGATAGATTCAGTGCTGGTCAATTGAAAGAGCATGATTCGACATGTGATTTCAAGATAGTTCCATGTGAACAAAAGTGCACAGCTAACATCTTGCGACGAGACATGGATAGGCACTGCATAACTGTTTGTCCATTGAAGCTTGTGGATTGCCCTTTCTCTGCCATAGGTTGTAGATCTACAATTGGGCAAAGTATGATTAGAAAACATTGTTCGGATGATGTTGAGTCTCACTTACTACTAATACTTAAAGGCATCCATCAACAAGCATCAGACAAAGATCTTCAAAGACGTGTGGAGCAAATTGTACAGACCTCATCGAAAAGCAAATTAGCAGAGGCTAAGGATGTGAGATCTTTTAAAAGTATTGTCAAGGACCTTGAAGTTAAGCTAGGGTCTCTGCAAGTGAATGCCAAGGAGAAAACTTGTGCAGAAGTTTCCAAAAATGAAGACAGTGAAGACAATAGAACTGGCTAA 1089 0.4013 MELPSNNLDLGPRQIEQEKDEGPLLHCDFCDIEVVHKLAQMFMPALGCACVDNTTGDPFNTPGFVAVDLRKEMIEFVTQKSELFVAESIISEEVPDGEALEHPFDIICFFVDEFVNSKRNLLSQFSGWLLSDKREDKIDDFVQEMEKNGFWPLDRRETLAKDLLKNVDFKSSFHCGMSFKSAEDLANHVDACNFRSVVCQNDGCNDRFSAGQLKEHDSTCDFKIVPCEQKCTANILRRDMDRHCITVCPLKLVDCPFSAIGCRSTIGQSMIRKHCSDDVESHLLLILKGIHQQASDKDLQRRVEQIVQTSSKSKLAEAKDVRSFKSIVKDLEVKLGSLQVNAKEKTCAEVSKNEDSEDNRTG 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02561 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 281 IPR013083 -
Vian3g02561 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 218 IPR013083 -
Vian3g02561 362 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Vian3g02561 362 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 339 - -
Vian3g02561 362 SUPERFAMILY TRAF domain-like 203 268 - -
Vian3g02561 362 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02561 Vian-Chr3 39880426 39882571 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g02561 zf-TRAF 7.9e-12 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02561 - - vra:106769987 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02561 3 39880426 39882571 Vian3g02561 3 39880426 39882571 ECH
Vian2g02947 2 50156019 50159288 Vian3g02561 3 39880426 39882571 PCT