Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02558 ATGAGGGGAAGAAGCTACAGTTATAGTCCGTCACCTCCAAGGCATTACAGCCGAAGAAAGCGCAGTCCCAGCCCTAGGGGCAGATACAGAGGACATGATAGAGATTTGCCAACTAGTCTTTTGGTTCGAAACCTTCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACAGGGGATCCAAGAGGTTTCGGGTTTGTCCAGTACGTGGACCCAGCTGATGCTGCGGATGCAAAACATCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTAGTGTTTGCTGGAGAAAACAGGAAGAAACCTTCTGAAATGCGAGCAAGGGAACGGAGGAGGGATCGATCATATGATTACAGGAGATCGCCTCGAACCTATTCTCCTAGTCCGGACTATTCGTCTTCTCCAAGACGAAGACGACATTACAGGTCAATCTCACCAAGGGTCAGAAAATATAGCGATCGATCATACTCTAGGTCACCTTATGGATCAAGAATCCGCAGCAGAAGCAGAAGTTACAGCAGGAGCTTGAGCGCAAGTCCTGGCTACTCTAGGTGA 612 0.4837 MRGRSYSYSPSPPRHYSRRKRSPSPRGRYRGHDRDLPTSLLVRNLHRDCRAEDLHGPFGQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAGENRKKPSEMRARERRRDRSYDYRRSPRTYSPSPDYSSSPRRRRHYRSISPRVRKYSDRSYSRSPYGSRIRSRSRSYSRSLSASPGYSR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02558 203 MobiDBLite consensus disorder prediction 175 203 - -
Vian3g02558 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Vian3g02558 203 SUPERFAMILY RNA-binding domain, RBD 38 142 IPR035979 GO:0003676
Vian3g02558 203 Gene3D - 29 145 IPR012677 -
Vian3g02558 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vian3g02558 203 MobiDBLite consensus disorder prediction 119 139 - -
Vian3g02558 203 MobiDBLite consensus disorder prediction 119 203 - -
Vian3g02558 203 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 193 - -
Vian3g02558 203 MobiDBLite consensus disorder prediction 1 35 - -
Vian3g02558 203 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02558 Vian-Chr3 39865545 39867414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02558 38 148 Eukaryotic Initiation Factors Gene Family AT1G71770 27.928 2.18e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02558 K12900 - gmx:100816913 213.001