Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02556 ATGGCAGTGTTCTCTTCATTCTCACGCCGCTTATTCAGAAAACAGTTTCCCCTCTTCTCCTTCTATTTCTCATTCTCCACAGTTTCGCCATCTCCGCCTCCGATCCGAGTCGCGCTCACCGAGTCCGTCGGCCGCGCCGTCTTCGCCACGCGCCCCATCGCGGCCGCCGACCTCATCCACACCGCCAGCCCCGCCGTTTGCCATCCCTACTCCGGCCGCGCCTCCTGCTACTCCTGTCTCGCCGCGCTCTCCAACTCCCAACCACTCCGCGCGCCTTTTTGCAGCCAACACTGTCACCAACGATCCAAGGGATATTACGATGTTGAGATGAAAGCAAATTGGGTGGCTTTTGATGACTATTGTGGGTCTCGTGGTTTGAAGTATCCCTTTCTGGTAAAGCGATTGGCTTGCATGGTCATAGCAGGAGATGCCAGAAGTGACACTCTTGACATACTCCAGCCTGCCAATTTTACTCCTGAGATGGTATCAAAGATGGAAGAAGAGTTTGTCTTGCTAAGGAATGCCTTTGCGGAGGCACTTATTGGAGATGATCATATTGCCTTTTTAACCAAGCAATGGTACATTAATGTTTTGGCTCGAATTCGAATCAATGCATTTCGCATTGAGTTGGTCGGAGGACTGTATGAAGATCTTCTTTCATTAGCTGTTGCATCTGTCGAAGCTGAGGCTGCTGTTGGAAATGCTGTCTATATACTTCCGTCCTTCTACAATCATGATTGTGATCCTAATGCACACATCATATGGATAGATAACGCTCATGCAAAATTGAAGGCACTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATTGATGCCAGCCTGGAACGCGATGCCAGAAGAGAGCTTCTGTTTCAAGGTTTTGGTTTTCAATGCAATTGTAGTAGGTGCTTACATGGCGATTAA 933 0.4877 MAVFSSFSRRLFRKQFPLFSFYFSFSTVSPSPPPIRVALTESVGRAVFATRPIAAADLIHTASPAVCHPYSGRASCYSCLAALSNSQPLRAPFCSQHCHQRSKGYYDVEMKANWVAFDDYCGSRGLKYPFLVKRLACMVIAGDARSDTLDILQPANFTPEMVSKMEEEFVLLRNAFAEALIGDDHIAFLTKQWYINVLARIRINAFRIELVGGLYEDLLSLAVASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAHAKLKALRDIDEGEELRICYIDASLERDARRELLFQGFGFQCNCSRCLHGD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02556 310 Pfam SET domain 44 279 IPR001214 GO:0005515
Vian3g02556 310 CDD SET_SMYD 233 306 - -
Vian3g02556 310 Gene3D - 75 123 - -
Vian3g02556 310 Gene3D - 124 205 - -
Vian3g02556 310 SUPERFAMILY SET domain 32 306 IPR046341 -
Vian3g02556 310 Gene3D SET domain 46 306 IPR046341 -
Vian3g02556 310 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 31 308 - -
Vian3g02556 310 ProSiteProfiles SET domain profile. 33 280 IPR001214 GO:0005515
Vian3g02556 310 SMART set_7 33 286 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02556 Vian-Chr3 39850867 39855149 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian3g02556 SET 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02556 - - gmx:100801270 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02556 3 39850867 39855149 Vian3g02556 3 39850867 39855149 ECH