Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02554 ATGGGCGCCAATTCGTTGCCATCGGCGGAATCAAACTTCGATCTCGATGAGCAGATCTCGCAGCTCATGCAATGCAAGCCGCTATCCGAGCACCAGGTAAGAGTTTTATGTGAGAAGGCTAAGGAAATTTTGATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCCGTGACAATTTGTGGTGATATTCACGGGCAGTTTCATGATCTTGCAGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTCGAAACTGTAACACTTCTTGTGTCACTGAAAGTGCGATATCCTCAGCGAATTACTATTCTTAGAGGAAATCATGAAAGTCGTCAGATCACTCAAGTATATGGTTTTTACGACGAGTGCCTCAGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGACCTTTTTGATTTCTTTCCGTTGACTGCATTGGTTGAGTCCGAAATATTCTGTTTGCATGGTGGGCTTTCACCTTCAATTGAGACTCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAAGTTCCTCATGAAGGGCCGATGTGTGATCTGTTATGGTCTGACCCTGATGATAGGTGTGGCTGGGGAATTTCTCCTCGTGGTGCAGGATATACTTTTGGTCAGGATATATCCGAACAATTTAATCACTCAAACAAGCTTAAGTTAATCGCTAGAGCTCATCAGCTGGTCATGGATGGATTTAACTGGGCTCATGAACAGAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCAATTTTGGAGGTTGACGATTCCAAGGGCCACACATTTATCCAGTTTGACCCTGCTCCCAGAAGAGGAGAACCTGATGTTACCCGTAGAACGCCTGATTACTTCCTATGA 945 0.4328 MGANSLPSAESNFDLDEQISQLMQCKPLSEHQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHSNKLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFDPAPRRGEPDVTRRTPDYFL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02554 314 ProSitePatterns Serine/threonine specific protein phosphatases signature. 119 124 IPR006186 GO:0016787
Vian3g02554 314 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 14 314 IPR047129 GO:0004722
Vian3g02554 314 FunFam Serine/threonine-protein phosphatase 8 314 - -
Vian3g02554 314 PRINTS Serine/threonine phosphatase family signature 153 179 IPR006186 GO:0016787
Vian3g02554 314 PRINTS Serine/threonine phosphatase family signature 56 83 IPR006186 GO:0016787
Vian3g02554 314 PRINTS Serine/threonine phosphatase family signature 182 209 IPR006186 GO:0016787
Vian3g02554 314 PRINTS Serine/threonine phosphatase family signature 85 112 IPR006186 GO:0016787
Vian3g02554 314 PRINTS Serine/threonine phosphatase family signature 238 258 IPR006186 GO:0016787
Vian3g02554 314 PRINTS Serine/threonine phosphatase family signature 260 276 IPR006186 GO:0016787
Vian3g02554 314 PRINTS Serine/threonine phosphatase family signature 118 142 IPR006186 GO:0016787
Vian3g02554 314 Pfam Calcineurin-like phosphoesterase 56 247 IPR004843 GO:0016787
Vian3g02554 314 CDD MPP_PP2A_PP4_PP6 14 298 - -
Vian3g02554 314 Gene3D - 8 314 IPR029052 -
Vian3g02554 314 SMART pp2a_7 28 298 IPR006186 GO:0016787
Vian3g02554 314 SUPERFAMILY Metallo-dependent phosphatases 10 299 IPR029052 -
Vian3g02554 314 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02554 Vian-Chr3 39822047 39828542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02554 20 244 Calmodulin-binding Proteins AT5G63870 34.831 4.90e-34 124