Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02545 ATGTCGTGTTGTGGAGGTGCTGAAGAGGAATTTGGCATTCCACCTACAAACCAATACAATGCATCAGTCGAAAAGGGTAGTGTATATGGTGGTGGAGGAGGAGATAGAGGAGAGCCAAGGGGCAATATAGTCAAAACTGGTGCTCCAAAAAAAGAATTACCAATTGAGATACCTGCCATTTCATTGGATAAGTTAAATCAGTTAACAGACAATTTTGGTACAAAGGCTTTGATAGGAGAAGGTTCTTATGGAAGGGTTTACTTTGCAAAGATGGATGGTGATAAGGAAGTTGCAATCAAGAAGCTAGATACTACTTCTTCTCCAGAACCTGACTCTGATTTTGCAACACAACTATCAGTTGTTTCAAGATTGAAAAGTGACCATTTTGTGGAATTGTTGGGATATTGTTTAGAGGAAAATAACAGAATTTTGGTTTATCAATATGCGAGTTTGGGTTCTTTGCACGACATATTACATGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGATTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAATTAAATAATGAATACCCTCCTAAGGCAATTGCTAAGCTAGCAGCGGTTGCAGCACTTTGTGTGCAATATGAAGCTGATTTCAGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAACCACTTCTCAATTCTAAACCGACTGGCCCTGATCCTAACTCTAACTCTAACTCTAACGCTTAA 732 0.3962 MSCCGGAEEEFGIPPTNQYNASVEKGSVYGGGGGDRGEPRGNIVKTGAPKKELPIEIPAISLDKLNQLTDNFGTKALIGEGSYGRVYFAKMDGDKEVAIKKLDTTSSPEPDSDFATQLSVVSRLKSDHFVELLGYCLEENNRILVYQYASLGSLHDILHGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPTGPDPNSNSNSNA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02545 243 FunFam Pti1 kinase-like protein 48 148 - -
Vian3g02545 243 ProSiteProfiles Protein kinase domain profile. 72 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02545 243 SUPERFAMILY Protein kinase-like (PK-like) 52 165 IPR011009 -
Vian3g02545 243 Pfam Protein tyrosine and serine/threonine kinase 76 162 IPR001245 GO:0004672|GO:0006468
Vian3g02545 243 Gene3D Transferase(Phosphotransferase) domain 1 146 239 - -
Vian3g02545 243 SMART tyrkin_6 72 222 IPR020635 GO:0004713|GO:0006468
Vian3g02545 243 Gene3D Phosphorylase Kinase; domain 1 45 145 - -
Vian3g02545 243 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Vian3g02545 243 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 25 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02545 Vian-Chr3 39633242 39636090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02545 159 226 Strubbelig Receptor Gene Family AT1G11130 36.232 7.77e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vian3g02545 PK_Tyr_Ser-Thr 1.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02545 - - pvu:PHAVU_007G261200g 288.885