Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02542 ATGGAACTGGCTTTGAGCTTAGGCGACACTTCCAAGCCCTTTACTTTTCTCGACAAGCCTGCTAATTTACCCTCCAAGGACCCTCCTGGGTTCTGCATAGGACCGGGTAAAGGGTTTGATGACAAAAGAAGTGATGCTGAGAAAAGGGGTTCTTCAGATCCACCGGTTCAGCTTGATCTTCTCCCTTTCACTCCCGTTCTCAGATCCCAACCTCCTTCCCAGCTACGAATCCCTTGGCTCACTGAACCATGTGGAGCGGCGAGGGTGCTGGACGTAAACCTTTTTCCGGAGGACGGCGATGACGGGACGTCGCTGTCGTCGCCTAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATGAGAAACGGTAATGCAGAGTTTGGAGGAAGAAACAAGAGGGAACAACAAGAGGGTGAAGGTACCAGAGCCAGTGATGACGAAGAAAATGGCTCAACCAGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCGAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCTTCCTCGTCAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTACAGAAGGAGCTTCAAGAACTTAGAGCCTTGAAAACTTCTCAACCTTTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACAACAACCAACCAAACTTCTTCCACTATCAACAATAATGCTTCTCAAATCCCTGTCGAGTTATCGCTCAGCAAGCCCAGAATATTGCCCTTCCATAATAGCCAGGCCCCAGCAACCCAGCCACAAGCTCAAGCTCAAGCCCACCAGATAGCCTCTTCATGA 975 0.4841 MELALSLGDTSKPFTFLDKPANLPSKDPPGFCIGPGKGFDDKRSDAEKRGSSDPPVQLDLLPFTPVLRSQPPSQLRIPWLTEPCGAARVLDVNLFPEDGDDGTSLSSPSSAVSPFQMDFSMRNGNAEFGGRNKREQQEGEGTRASDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNNASQIPVELSLSKPRILPFHNSQAPATQPQAQAQAHQIASS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02542 324 Gene3D - 158 208 - -
Vian3g02542 324 SMART halz 210 253 IPR003106 GO:0006355|GO:0043565
Vian3g02542 324 CDD homeodomain 154 211 IPR001356 GO:0003677
Vian3g02542 324 Pfam Homeodomain 154 208 IPR001356 GO:0003677
Vian3g02542 324 MobiDBLite consensus disorder prediction 1 64 - -
Vian3g02542 324 FunFam Homeobox-leucine zipper protein 18 138 215 - -
Vian3g02542 324 SMART HOX_1 152 214 IPR001356 GO:0003677
Vian3g02542 324 Pfam Homeobox associated leucine zipper 210 244 IPR003106 GO:0006355|GO:0043565
Vian3g02542 324 MobiDBLite consensus disorder prediction 100 120 - -
Vian3g02542 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 285 - -
Vian3g02542 324 MobiDBLite consensus disorder prediction 38 52 - -
Vian3g02542 324 Coils Coil 216 246 - -
Vian3g02542 324 ProSiteProfiles 'Homeobox' domain profile. 150 210 IPR001356 GO:0003677
Vian3g02542 324 CDD bZIP 203 242 - -
Vian3g02542 324 ProSitePatterns 'Homeobox' domain signature. 185 208 IPR017970 GO:0000981|GO:0006355
Vian3g02542 324 MobiDBLite consensus disorder prediction 128 159 - -
Vian3g02542 324 SUPERFAMILY Homeodomain-like 146 211 IPR009057 -
Vian3g02542 324 MobiDBLite consensus disorder prediction 304 324 - -
Vian3g02542 324 MobiDBLite consensus disorder prediction 99 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02542 Vian-Chr3 39594410 39595983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02542 55 276 Homeobox Transcription Factor Family AT5G47370 54.894 3.62e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian3g02542 Homeodomain 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02542 K09338 - gmx:100779138 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02542 3 39594410 39595983 Vian3g02542 3 39594410 39595983 ECH
Vian2g02025 2 39926596 39927639 Vian3g02542 3 39594410 39595983 PCT