Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02536 ATGGACAATGGCTTGGCCTTTATCTTAACTTCAGATAGGACTATCCCAGAAAACAGTGATGGACAATGGATTGGTATTGTAAATGCTACTTCCAATGGAACTTCACAGCCTGGTATTCTAGCAGTGGAGTTTGACACAAGACACAGTTTCAAAGAAGATGGCCCTGACAATCACGTTGGCATCAACATAAACAGCATCAACTCCATCCAACAGGTTTCGTTAATAAACACTCGGCTCAATCTATCTTCAGGTCAAGATGTCAAATTTCACATTCAGTACATCAATGACACAATATCAGTTTTGGGTGCCATGAGTGGAACTTCTGAAGAATCCATGGAGATCCTCTTGGTATCTCCACCTCTTAATTTGTCTTCCTTTCTTCAAAAGGAGGTTTACATTGGCTTCTCGGCCTCAACAAGTAACTACACGGAGCGGAACTGTGTCAGATCGTGGGAATTCAGCGGGGATGATATTAGGGATGATGACAAAAGTCTCTTGTGGGTGGTTTATGTTGCCGTTCCAATCGTGATTGTTTTAATTATCATTGGTGGGTTGGTGATCTTTTTCTTGCGCTGGCAAAAGATTCGCCATATGGAGGGGCCAGAAGATGCATATCCAAGGATAGAGGATCAGATTAAATATTCCTCTATGTCTCCGAAGAAGTTTAGGCTAAGGGAACTAACGAAAGCAACTGGTGGATTCAGCCTTCAAAACAAGCTTGGACAAGGCGGGTTTGGAACTGTGTATAAGGGGCTACTGGAAAATAAAGAGGTAGCTGTAAAGAGAGTTTCCAAAAACTCACGCCAAGGGAAGCAAGAGTTTTTAGCAGAAGTGACAACAATCGGAAGCCTTCACCATAGAAATTTGGTGAAACTCACTGGTTGGTGCTATGAGAATAGAGAGCTTCTCCTTGTGTACGAGTTCATGCCTAATGGAAGCCTAGACAAGTACCTCTTTGGTGACAAAGATTGTGGTGATAATTATAACTTTAAAACACTGGACTGGGAAACTAGGCGAAGAGTGATTAATGGGGTGGCTCAAGCACTTGACTACCTTCACGATGGGTGTGAGAAGAGGGTTCTCCACAGAGACATCAAGGCCAGCAACATAATGTTGGACTCAGATTACAATGCCAAGCTGGGAGACTTTGGATTGGCTAGAACAATTCAGAAGAGAAATGAAACGCATCACTCTACAAAAGAGATTGCGGGCACACCCGGGTACATGGCCCCAGAAACCTTCCTGACTGGGAGGGCAACGGTGGAGACAGATGTGTATGCATTTGGGGTTCTTGTGTTGGAAGTAGTGTGTGGAAAGAGGCCAGGGAATGTGTATTCACAGGATGACTACAAGAACAGCATTGTGTATTGGGTGTGGGATTTATATGGGAAGGGGAAAGTAGTTGGTGGTGTTGATGCAAGGTTGAAGAAGGAGGAGATTGTGGAGGAAGAGGTGGACTGTGTTCTTGTTCTTGGCTTGGCTTGCTGCCATCCAAATCCACACAAAAGACCATCAATGAGAACAGTTCTTCAGGTTCTGAATGGGGAAGCACCTCCACCTGAAGTGCCTAAGGAAAGACCAGTTTTTATGTGGCCTGCTATGCCTCCATCTTTCAAAGAAGCTGAAGATAGCTCCCTCATCCAGGGAACTCTCACTCCTTTCACTGAGATCACTGGAAGATGA 1683 0.4444 MDNGLAFILTSDRTIPENSDGQWIGIVNATSNGTSQPGILAVEFDTRHSFKEDGPDNHVGININSINSIQQVSLINTRLNLSSGQDVKFHIQYINDTISVLGAMSGTSEESMEILLVSPPLNLSSFLQKEVYIGFSASTSNYTERNCVRSWEFSGDDIRDDDKSLLWVVYVAVPIVIVLIIIGGLVIFFLRWQKIRHMEGPEDAYPRIEDQIKYSSMSPKKFRLRELTKATGGFSLQNKLGQGGFGTVYKGLLENKEVAVKRVSKNSRQGKQEFLAEVTTIGSLHHRNLVKLTGWCYENRELLLVYEFMPNGSLDKYLFGDKDCGDNYNFKTLDWETRRRVINGVAQALDYLHDGCEKRVLHRDIKASNIMLDSDYNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGNVYSQDDYKNSIVYWVWDLYGKGKVVGGVDARLKKEEIVEEEVDCVLVLGLACCHPNPHKRPSMRTVLQVLNGEAPPPEVPKERPVFMWPAMPPSFKEAEDSSLIQGTLTPFTEITGR 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02536 560 CDD STKc_IRAK 240 515 - -
Vian3g02536 560 PANTHER - 3 520 - -
Vian3g02536 560 Gene3D - 2 157 - -
Vian3g02536 560 SUPERFAMILY Protein kinase-like (PK-like) 214 513 IPR011009 -
Vian3g02536 560 Gene3D Transferase(Phosphotransferase) domain 1 309 533 - -
Vian3g02536 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 360 372 IPR008271 GO:0004672|GO:0006468
Vian3g02536 560 Pfam Legume lectin domain 3 162 IPR001220 GO:0030246
Vian3g02536 560 Pfam Protein kinase domain 235 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02536 560 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 159 IPR013320 -
Vian3g02536 560 Gene3D Phosphorylase Kinase; domain 1 219 308 - -
Vian3g02536 560 FunFam probable L-type lectin-domain containing receptor kinase S.5 309 519 - -
Vian3g02536 560 ProSitePatterns Protein kinases ATP-binding region signature. 240 261 IPR017441 GO:0005524
Vian3g02536 560 ProSiteProfiles Protein kinase domain profile. 234 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02536 560 SMART serkin_6 234 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02536 560 FunFam Probable L-type lectin-domain containing receptor kinase S.5 219 308 - -
Vian3g02536 560 CDD lectin_legume_LecRK_Arcelin_ConA 4 154 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02536 Vian-Chr3 39462644 39479593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02536 3 528 Receptor kinase-like Gene Family AT5G10530 41.621 2.36e-121 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian3g02536 Pkinase 9.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02536 - - gmx:100790353 934.095