Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02533 ATGGCAGATGGTGAGGATATCCAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCGCGTCACACTGGTGTGATGGTTGGAATGGGACAAAAGGATGCTTATGTTGGTGATGAGGCTCAATCCAAGAGAGGTATTGTTCTGGACTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTATGAAGGGTATTCCCTGCCACATGCAATCCTGCGTTTGGATCTTGCAGGGCGTGATCTGACTGATGCCCTCATGAAAATCTTAACCGAGCGTGGCTACTCTTTCACCACTACTGCTGAGAGAGAAATTGTGAGAGATGTTAAGGAGAAGTTAGCCTACATTGCTCTTGACTATGAGCAAGAGCTAGAAACATCAAAAACAAGCTCAGCTGTTGAGAAGAGCTATGAGCTACCTGATGGACAGGTGATCACGATCGGTGCTGAAAGGTTCCGTTGCCCTGAAGTTCTCTTCCAGCCATCCATGATAGGGATGGAATCTTCTGGAATTCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGACATCAGGAAGGACCTCTATGGTAACATTGTGTTGAGTGGTGGTTCAACAATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAGATCACAGCATTGGCCCCAAGCAGCATGAAGATTAAGGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCCTCCCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAATATGATGAATCAGGCCCCTCAATCGTCCACAGGAAATGCTTCTAA 873 0.4777 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIVLDSGDGVSHTVPIYEGYSLPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESSGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02533 290 SUPERFAMILY Actin-like ATPase domain 65 290 IPR043129 -
Vian3g02533 290 FunFam Actin, muscle 95 186 - -
Vian3g02533 290 FunFam Actin, alpha skeletal muscle 3 77 - -
Vian3g02533 290 Gene3D - 66 253 - -
Vian3g02533 290 PRINTS Actin signature 51 62 IPR004000 -
Vian3g02533 290 PRINTS Actin signature 28 37 IPR004000 -
Vian3g02533 290 Gene3D Actin; Chain A, domain 4 95 186 - -
Vian3g02533 290 SMART actin_3 7 290 IPR004000 -
Vian3g02533 290 Pfam Actin 63 290 IPR004000 -
Vian3g02533 290 Gene3D Actin; Chain A, domain 2 34 65 - -
Vian3g02533 290 FunFam Putative actin-related protein 5 254 282 - -
Vian3g02533 290 FunFam Actin, alpha skeletal muscle 36 68 - -
Vian3g02533 290 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vian3g02533 290 FunFam Major actin 172 253 - -
Vian3g02533 290 Gene3D - 254 284 - -
Vian3g02533 290 SUPERFAMILY Actin-like ATPase domain 5 66 IPR043129 -
Vian3g02533 290 ProSitePatterns Actins signature 2. 271 279 IPR004001 -
Vian3g02533 290 PANTHER ACTIN 64 283 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02533 Vian-Chr3 39442164 39444418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02533 1 67 Miscellaneous Gene Families AT3G53750 98.507 1.31e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02533 K10355 - rsx:RhiXN_03684 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02533 3 39442164 39444418 Vian3g02533 3 39442164 39444418 ECH
Vian2g02014 2 39796121 39798343 Vian3g02533 3 39442164 39444418 PCT