Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02532 ATGTTTTCGTGGCTGGCAAGGATAGTGTCGGCATGCTTGAGACCGGTGAGGCGATATGCGCGTATGAGCAAGGATGACTTCGACGACGCCGCCGCCGCCAGCGACGTGCTCGTGTGGCACCGCGATCTCGAGAAGCACTCCTGCGGCGAGTTCTCCTTCGCCGTCGTGCAGGCTAACGAAGTGATCGAGGATCAAAGCCAGGTGGAGACCGGCGCGGACGCCGTCTTCGTTGGCGTCTATGACGGACACGGCGGAGCCGAAGCCTCGCGCTTCATCAACGATCACCTATTCCTTAATCTCATGAGGGTTGCTCAAGAAAATGGTTCTATCACCGAAGATATTATCAGGAATGCTGTTTCTGCTACTGAGGATGGGTTTCTGACTCTTGTTCGAAGGAGTTATGGAATAAAGCCATTGATAGCAGCAATGGGTTCCTGTTGCCTGGTTGGTGTTATCTGGAAAGGAACACTATATATTGCGAATCTCGGAGACTCTCGAGCTGTGATTGGTTCTGTAGGTAGATCAAACAAGATCATCGCTGAACAGTTGACCAAAGAGCACAATGCAAGCAAGGAGGAGGTTAGACGAGAACTCAGGTCTTTGCATCCAGAAGATTCACAGATTGTAGTTATGAAGCAAGGAACATGGCGCATTAAAGGCATCATCCAGGTATCCAGATCTATAGGAGATGCATATTTGAAGCGGCCGGAGTTCTCGTTCGATCCGTCTTTCCCACGGTTCCATCTGCCTGAACCTATCCGCCGCCCTGTGCTAACTGCAGAACCATCCATATGTTCAAGAGTTTTACGACCTAATGATAAGTTCGTTATCTTTGCATCTGATGGACTCTGGGAGCACTTGACAAACCAGGAAGCTGCTGAGATTGTTCATAACAATCCACGAACAGGGATTGCAAGAAGACTTCTTATGGCAGCTTTGAATGAAGCAGCTAGGAAAAGGGAAATGAGATATAAAGACCTCCAGAAGATTGGAAAGGGGATTAGACGTTTCTTCCATGATGATATCACAGTGGTGGTTGTCTTCATTGACCATGAAATGGGTGGCAAGAAGGTTACAGTTCCTGAGTTGTCCGTCAAAGGGTTTATTGACACAGTTGGACCATCAAATTTTAGAAATTTGCGGGGTTTGGAATGA 1155 0.4823 MFSWLARIVSACLRPVRRYARMSKDDFDDAAAASDVLVWHRDLEKHSCGEFSFAVVQANEVIEDQSQVETGADAVFVGVYDGHGGAEASRFINDHLFLNLMRVAQENGSITEDIIRNAVSATEDGFLTLVRRSYGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSVGRSNKIIAEQLTKEHNASKEEVRRELRSLHPEDSQIVVMKQGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPEPIRRPVLTAEPSICSRVLRPNDKFVIFASDGLWEHLTNQEAAEIVHNNPRTGIARRLLMAALNEAARKREMRYKDLQKIGKGIRRFFHDDITVVVVFIDHEMGGKKVTVPELSVKGFIDTVGPSNFRNLRGLE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02532 384 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Vian3g02532 384 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722|GO:0006470
Vian3g02532 384 Pfam Protein phosphatase 2C 69 316 IPR001932 -
Vian3g02532 384 Coils Coil 180 200 - -
Vian3g02532 384 FunFam Probable protein phosphatase 2C 42 41 357 - -
Vian3g02532 384 SUPERFAMILY PP2C-like 56 350 IPR036457 -
Vian3g02532 384 SMART PP2C_4 44 347 IPR001932 -
Vian3g02532 384 Gene3D - 28 357 IPR036457 -
Vian3g02532 384 ProSiteProfiles PPM-type phosphatase domain profile. 50 349 IPR001932 -
Vian3g02532 384 CDD PP2Cc 51 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02532 Vian-Chr3 39436862 39440020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02532 1 377 PP2C-type Phosphatase Gene Family AT5G06750 69.588 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02532 K01102 - gmx:100778238 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02532 3 39436862 39440020 Vian3g02532 3 39436862 39440020 ECH
Vian3g02532 3 39436862 39440020 Vian1g03267 1 54433577 54441016 ECH