Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02525 ATGGACCTTCGCAAGCGTGGAAGGCCCGAACTCTCCTTCAGCCTCAACGGCGCCGTTAAGAAGACCAAGCAAGGGATTGCAATAAAACTGCAACCACAATTTAGAACCTTGATTGACAGTGCTCATGGAGGGGAATTTCACTTGGTGGGGTTGAGCAAACACAGCTCTGTTGCCGAGCTTACTCTTTGGTTTGGGTGTAGGAAATGGAGACTTCAAACTGCCCCCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCATTTCTTGCATTATGTTCCTGGTGGTTATAATGTGGTTGCCCATATGATGAATTTGAAACCTGCTGCTCCTCCTTCAAGAGCTGTTGCTGCACCACTTCCGGTATCTAATGGCTCTACTCCATCTGCTGTTAAAACACGCATATGTAACAAGTTCAATACTGCCGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCTCACGGTGAATGGGAACTTGGTAAACCTATTGCTCCCTCAATTGATGATCATCGTCCTTTGGGACCTCCATCAGCTGGTCGAATGGCTGGTCGAATTGAGCCTCCTCCCTTGGCTGGGAGCTTTGGTGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCTCTGGCAGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCGAAACTTTCAATCCGAGAGCATGAAACTGATCCAAACCTTAGAAACATTGAACTTGAGGGAACATTCGAACAGATAAAGGAGGCAAGTAATATGGTAAAAGATTTACTTTTGACTGTTTCAATGTCAGCCCCTCCCAAATCCACCCCTGGTGTTCCTGGTGCCCCTGCTCCACCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGGTCTTGCACCTTTGGAGATCGATGCCACTTTGCTCATGGAGCTGCTGAGTTGCGCAAGCAGGGGGTATGA 972 0.4825 MDLRKRGRPELSFSLNGAVKKTKQGIAIKLQPQFRTLIDSAHGGEFHLVGLSKHSSVAELTLWFGCRKWRLQTAPTAGCPFGEGCHFLHYVPGGYNVVAHMMNLKPAAPPSRAVAAPLPVSNGSTPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPLGPPSAGRMAGRIEPPPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGDRCHFAHGAAELRKQGV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02525 323 SUPERFAMILY CCCH zinc finger 289 319 IPR036855 GO:0046872
Vian3g02525 323 ProSiteProfiles Type-1 KH domain profile. 196 260 - -
Vian3g02525 323 Gene3D - 121 160 - -
Vian3g02525 323 Gene3D - 288 321 - -
Vian3g02525 323 PANTHER CCCH ZINC FINGER/TIS11-RELATED 76 167 IPR045877 GO:0003729
Vian3g02525 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 155 IPR000571 GO:0046872
Vian3g02525 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 290 314 IPR000571 GO:0046872
Vian3g02525 323 ProSiteProfiles Zinc finger C3H1-type profile. 289 316 IPR000571 GO:0046872
Vian3g02525 323 SMART c3hfinal6 63 91 IPR000571 GO:0046872
Vian3g02525 323 SMART c3hfinal6 289 315 IPR000571 GO:0046872
Vian3g02525 323 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Vian3g02525 323 SMART kh_6 195 265 IPR004087 GO:0003676
Vian3g02525 323 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Vian3g02525 323 Pfam KH domain 199 261 IPR004088 GO:0003723
Vian3g02525 323 Gene3D K Homology domain, type 1 194 287 IPR036612 GO:0003723
Vian3g02525 323 FunFam Zinc finger CCCH domain-containing protein 123 160 - -
Vian3g02525 323 FunFam Zinc finger CCCH domain-containing protein 284 320 - -
Vian3g02525 323 Pfam RNA-binding, Nab2-type zinc finger 66 89 - -
Vian3g02525 323 CDD KH-I_AtC3H36_like 199 264 - -
Vian3g02525 323 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 185 266 IPR036612 GO:0003723
Vian3g02525 323 SUPERFAMILY CCCH zinc finger 126 159 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02525 Vian-Chr3 39349821 39353773 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian3g02525 KH_1 1e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02525 - - pvu:PHAVU_007G259300g 505.368