Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02524 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCATGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGCAGACCGAAAACTCATTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGGGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGATTAAGAAAGGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTTGATGAAAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACAGAGAGGTACTCAACAATGCTGGCGGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACGCAAAGATGCGCATGGAGATGTTATTAATGAACCTAAAGAAGCTGATGTTGGTAGATATGCCAGGAATAACATACTGGAGGACGACGAGCAAACAATTGAGCAAGATGAGGCTTTGATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCAAAATGAAATGAATCTTCCGATTGAGGAGTTACTCAAGCGTTATGCAGGGGAGAAAGGAGAATCTATGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTAGGAACAACTGGTGATGGTAAGAAAATATTACCATCAGAAAATGGTGATGATCATTTATCTGTTAGCAAAAATGGTACAAACAACTCCAGTATGGTCTCTGGTCGACGTTGTGATGAAAGTGATGGTGATATGGCTACACCAACAAAAAATCTATCTCAATATGAGGAAGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCCAATGAAGATTTTTCGTATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTGGAAAGAGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAACGAAGATGGGGGATATGAAACTGATTATGCTTCTGCTTTATCCGAAGACCATTCAGACTCTCCTGTCCATGAAGATGCTGAGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATAAAGTCTGGTGAACACCTGGCTACCACACAGTCCCAGACAGAAGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACCATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAGGGGATTTGGGGTCCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTTTGAAATGGTGTCCTGCCTTTAAAATATTGACTTATTTTGGAAGTGCCAAGGAGCGAAAATTTAAAAGGCAAGGATGGTTGAAACCAAACTCATTTCATATATGCATAACTACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATATCTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAAAGGCGGATTCTCTTGACTGGGACACCACTACAGAACGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGAGAGATGTGGAAAAACAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTCAGTTCGTTTGATATATGTGGTATTGATGTTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGCCCCTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTTACTGATCTTGACTATAGTATGACTGCATGGGAAAGTGATGAAGTTGGAGCTATTGAGACCCCTGGAACCTCAATCATGGAGCGTACTGATATAGATGAGCTAGAAGTAATTAGGCCACTAAATTGTCAAAAAAGGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAACAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAGAGACCTATGTACTCAACAACTCTGAGGAATCTTGTTACCTTAAGGCATCCTGTATATGACATTCATCTGGTGAAAGCAAATCCTACTTCATATATGTACTCAACAAAGCTGGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTTGCCGCTACTGTCACCAATCCGACCAGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGCCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAACTTATATGGCTATACATACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGACAGACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGTGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCATAGAATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATAAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGAGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTTCAATAAAAAATATGCTGAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCACTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACCGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCAGAATTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGCCTTGGTGTTAAATGGAAGTGATCAGAAGGAAGATAGACCACCAAACTCTGTTGTTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCTTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGGATTGAAAAGTACAAGGAGGAGATGGAGGCTGAAATTGATGAAGACGAGGAACCTCTTGTATATGAAAGAGATGGCTGGGATGCTGATTTTGCAACAATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACTTCTGGGTTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATTGATGATGAGGATATCACTGGTCTGGAATTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAATCTAAAGCAACGACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCGTCTGATTTAGAATCCAATGCTTTGGTTGTGCAATATGAACATGCAGAATCAAAGACTAGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGGCTCAGGAGGATGCTATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAAGAATGTATTGTCAATGGACAATGCAAATAATGAGAAGGCCATCACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGCAAATAGGGAGTTGCTGCTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTCGACCGCAGGCAAAATCCATCACCCACCTGTAATGGTCTCTATTTTGATCAGGGTCTTTTTACTTCCATAGGCCAGCCTTCCCAAAATTCCTTGAAGAAATCCTCTGAAAGGGTGCCATTTGCAAATCTGGTCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATTCCACAACTGGGCAAGTGAATGATAGAGTCATCCTCCCTAACCAAGGGGAAGGCTTGCCAGTGAGTGCTGATAGGTTGGATATTACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCTTTATTTCCATCCGTTATAAACTTATCAATACATGGGACTGATCCAACACCATCTTTAAGTAAGCAAACAGGAGAAGATGGCTTTAAAATTGGTCTGTTTATGGCAGAGAATCGTTTCAGCTGGACTGATGTTAGGGATGGAAATTGGGAGGCAACAAGAATTTGTGAAGAAGACGTCTCTGGATGGGCATCATCTGCATTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCTAAAAGAGCTTCAATTGATGTCAGTGAAATGCATCACCATCAGGCTGACTCAATAGTCCAGTCGGTGCCATCACTTAAGGATCTGAGATTTGATCTCACTTCATTCACTACAGATGAAATTGGACTTACTGCTGTGGACACATGTTTCCCCTTTGACTTGAATGTGGAAAGTTCATGGGAAATGGAGGGTGTTGGAATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAATATACTGACATTAGATAA 6141 0.4091 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQRKDAHGDVINEPKEADVGRYARNNILEDDEQTIEQDEALITKEERQEELEALQNEMNLPIEELLKRYAGEKGESMMKESSPEHSEDVEKIVGTTGDGKKILPSENGDDHLSVSKNGTNNSSMVSGRRCDESDGDMATPTKNLSQYEEGQSENLKEVPSETANEDFSYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGGYETDYASALSEDHSDSPVHEDAEQKDSAIPMDEDIKSGEHLATTQSQTEEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDVQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMTAWESDEVGAIETPGTSIMERTDIDELEVIRPLNCQKRLQGTNIFEDIQRKIWEERLKQAKERATAIAWWNSLRCKKRPMYSTTLRNLVTLRHPVYDIHLVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETNVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGSYNTEFFKKLDPMELFSGHRTLSIKNMLKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNLNKENALVLNGSDQKEDRPPNSVVVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERDGWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDITGLEFVSPNSSMQKKRKSKATTDGEEKRLKKSKKSKRDPPDIYASDLESNALVVQYEHAESKTSESLVDLEQKTAGRGKMGGKISITPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLSMDNANNEKAITPGSGKALLKVTEDNIRMLLDVASEQANRELLLQKHFFALLSSAWKVASHVDRRQNPSPTCNGLYFDQGLFTSIGQPSQNSLKKSSERVPFANLVQSKKLVAAALDDSTTGQVNDRVILPNQGEGLPVSADRLDITLEFPKEESDVLALFPSVINLSIHGTDPTPSLSKQTGEDGFKIGLFMAENRFSWTDVRDGNWEATRICEEDVSGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDVSEMHHHQADSIVQSVPSLKDLRFDLTSFTTDEIGLTAVDTCFPFDLNVESSWEMEGVGMIPHDYVTGLISDLDDCTTFPEYTDIR 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02524 2046 MobiDBLite consensus disorder prediction 360 404 - -
Vian3g02524 2046 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 754 819 - -
Vian3g02524 2046 Pfam Helicase conserved C-terminal domain 1049 1161 IPR001650 -
Vian3g02524 2046 CDD DEXQc_SRCAP 508 730 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 239 261 - -
Vian3g02524 2046 Pfam HSA domain 27 93 IPR014012 -
Vian3g02524 2046 Coils Coil 1389 1409 - -
Vian3g02524 2046 PANTHER HELICASE SRCAP-RELATED 15 1957 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 276 294 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 1917 1966 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 1460 1561 - -
Vian3g02524 2046 Coils Coil 194 223 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 448 467 - -
Vian3g02524 2046 Gene3D - 1619 1693 - -
Vian3g02524 2046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 520 685 IPR014001 -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 1917 1948 - -
Vian3g02524 2046 Gene3D - 754 812 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 333 359 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 1 33 - -
Vian3g02524 2046 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1019 1268 - -
Vian3g02524 2046 SMART ultradead3 504 697 IPR014001 -
Vian3g02524 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 1217 IPR027417 -
Vian3g02524 2046 Gene3D - 477 753 IPR038718 -
Vian3g02524 2046 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 304 324 - -
Vian3g02524 2046 Pfam SNF2-related domain 525 797 IPR000330 GO:0005524|GO:0140658
Vian3g02524 2046 SMART helicmild6 1078 1161 IPR001650 -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 1949 1966 - -
Vian3g02524 2046 Gene3D - 1019 1269 IPR027417 -
Vian3g02524 2046 SUPERFAMILY Homeodomain-like 1634 1694 IPR009057 -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 239 441 - -
Vian3g02524 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 730 IPR027417 -
Vian3g02524 2046 FunFam Photoperiod-independent early flowering 1 478 753 - -
Vian3g02524 2046 Coils Coil 1441 1461 - -
Vian3g02524 2046 Coils Coil 1265 1285 - -
Vian3g02524 2046 SMART bromneu2 23 94 IPR014012 -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 1460 1475 - -
Vian3g02524 2046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1052 1202 IPR001650 -
Vian3g02524 2046 Pfam Myb-like DNA-binding domain 1636 1701 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 419 441 - -
Vian3g02524 2046 CDD SF2_C_SNF 1037 1172 - -
Vian3g02524 2046 MobiDBLite consensus disorder prediction 1533 1560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02524 Vian-Chr3 39322820 39343935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02524 528 800 RAD5 or RAD16-like Gene Family AT5G43530 29.503 6.88e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian3g02524 SNF2_N 1.1e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02524 3 39322820 39343935 Vian3g02524 3 39322820 39343935 ECH