Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02517 ATGAACGAGTACAGGATTGATTGTGTTGGACGGATTCAACAAAGCTATGGTCTAAATGGGGATTTGAGTTCAGAGTTTGGCAATTGTTCTAGTCAATGTTTTGATATAATACAGGCTTCACATATGGGAACTTGCAATCAGCCACTTGCTATGGCCAGTGGTGGATTTGAAGAGGAACCACACATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAATCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGATTCCCACAATATGATAGACTAGTTGGTAACCCCTCTTTGATATCTCAATTCTCTAAGATCAGTGATGTGGAATTCCCTTTGTATCAATCTCCAAGGCAAAACCTTTTCTTGGCTTCATTGGCAAACCAACCTGCCCCTAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCCCATGTGAATAGTGATCAATGTGTTAGATCTCCTGAAAAGTCTAATAAAATCTCATCTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAATTGAACAACCCAAGTTGTTCATTGGTGATGCTTCAAGCCCTTCGGTTCCTTGTATAGGAAATCAGGATCAAAGACAAGAGATGCTGTCACCAACACTCTCAGCAGGTAGTTTGCTAACTTCTTCTGGAAACTCTTCTTCAAATGGACCAGTAGTCTCAAGTAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAAGCAACGCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAAAGAACGAATGTAGAGAATGTGCATCTTGATGCCAAAACTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAACTACAGTTGAGGATTGAGGAACAAGGTAAGCAGCTGAAAATGATGTTTGACCAAACAGCAGAAGACAAGTGA 1098 0.4107 MNEYRIDCVGRIQQSYGLNGDLSSEFGNCSSQCFDIIQASHMGTCNQPLAMASGGFEEEPHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLVGNPSLISQFSKISDVEFPLYQSPRQNLFLASLANQPAPNFELSNPLQAMLLSHVNSDQCVRSPEKSNKISSGNFPGSSFLPIEQPKLFIGDASSPSVPCIGNQDQRQEMLSPTLSAGSLLTSSGNSSSNGPVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRTNVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQTAEDK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02517 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 226 360 IPR044848 GO:0003700
Vian3g02517 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 234 289 IPR006447 GO:0003677
Vian3g02517 365 Coils Coil 320 340 - -
Vian3g02517 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 291 IPR017930 -
Vian3g02517 365 SUPERFAMILY Homeodomain-like 232 288 IPR009057 -
Vian3g02517 365 FunFam Myb family transcription factor 233 291 - -
Vian3g02517 365 Gene3D - 233 292 - -
Vian3g02517 365 Pfam Myb-like DNA-binding domain 238 287 IPR001005 -
Vian3g02517 365 Pfam MYB-CC type transfactor, LHEQLE motif 317 362 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02517 Vian-Chr3 39189374 39191849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02517 224 360 G2-like Transcription Factor Family AT4G28610 59.286 1.23e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian3g02517 Myb_DNA-binding 3.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02517 - - gmx:102668541 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02517 3 39189374 39191849 Vian3g02517 3 39189374 39191849 ECH